CX069702

Overview
NameCX069702
Unique NameCX069702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4304 contig Csv1_Contig4304:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX069702 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.830e-36
Identity = 82/157 (52.23%), Postives = 99/157 (63.06%), Query Frame = 3 
Query:    3 FDNFQFVNFTEIMSKNVDRSRKEAEFALAALMEIPSQYKAALEFNILGAQRGKAVDRVSLPPP-QYGAASQNTPK-----TXXXXXXXXXXXXGHERVVGTAPPASSTSDNHVCPICLTDPKDMAFXXXXXXXXXXXXDLDLCPICRSFIQTRIKLY 455
            FDNFQFVNFTEIM+KN  +S KE EFAL+ALMEIP QYKA +E N+LG + G   +R  LPPP + G++S N+PK     +             H R     PP SS SDN +CPICL++PKDMAF            DL +CPICR+ IQTRIKLY
Sbjct:  312 FDNFQFVNFTEIMAKNKAQSLKETEFALSALMEIPQQYKATIELNLLGRRNGYIPERFPLPPPMRGGSSSYNSPKPSRLPSFKPSVPPHPTEGYHVRSSPVPPPTSSASDNQLCPICLSNPKDMAFGCGHQTCCECGPDLQMCPICRAPIQTRIKLY 468
[Close]
BLAST of CX069702 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.197e-33
Identity = 74/151 (49.01%), Postives = 93/151 (61.59%), Query Frame = 3 
Query:    3 FDNFQFVNFTEIMSKNVDRSRKEAEFALAALMEIPSQYKAALEFNILGAQRGKAVDRVSLPPPQYGAASQNTPKTXXXXXXXXXXXXGHERVVGTAPPASSTSDNHVCPICLTDPKDMAFXXXXXXXXXXXXDLDLCPICRSFIQTRIKLY 455
            FDNFQFVNFTEIMSKN D+SRKE EFAL+ALMEIP QYKA +E N+LG + G    R+ LPPP    +S ++ +               +++       SS  D  +CPICL++PK+MAF            DL +CPICR+ IQTRIKLY
Sbjct:  346 FDNFQFVNFTEIMSKNKDQSRKETEFALSALMEIPPQYKATIELNLLGVRNGNIPQRIPLPPPVQSGSSFSSSRIPNFEPSVPPYPFESKQM-------SSADDIQLCPICLSNPKNMAFGCGHQTCCECGPDLKVCPICRAPIQTRIKLY 489
The following BLAST results are available for this feature:
BLAST of CX069702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RGLG2_ARATH1.830e-3652.23E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis t... [more]
RGLG1_ARATH7.197e-3349.01E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_12C07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12C07-F14-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069702 ID=CX069702; Name=CX069702; organism=Citrus sinensis; type=EST; length=671bp
CATTTGATAATTTTCAGTTTGTAAATTTTACAGAAATTATGTCAAAGAAT
GTTGACCGATCCAGAAAAGAAGCTGAATTTGCTCTCGCAGCCTTAATGGA
GATACCTTCTCAGTACAAAGCCGCACTAGAATTTAATATATTGGGTGCTC
AAAGAGGGAAGGCTGTTGACAGGGTCTCCCTACCCCCTCCTCAGTATGGT
GCAGCTTCTCAAAACACTCCAAAAACTTCACGGTCAAGTAGCTTTCGTCC
AAGTGCTCCTGCAGGTCATGAAAGAGTTGTTGGCACAGCTCCACCTGCTA
GTTCTACTTCTGATAATCATGTTTGTCCTATATGCCTTACCGATCCAAAG
GATATGGCCTTTGGTTGTGGTCATCAGACTTGCTGTGGGTGTGGACAAGA
TCTAGATTTATGCCCCATTTGCCGGAGCTTCATCCAAACCAGAATAAAAC
TCTACTAAATGGCATCTTCTTGTCTGTATTTTTTTTATAATGCTGTTGAC
TTATTCAGAGACTGTAAGTTATTACCAAGTCCCTTTGGCTGGGGATCTTG
CTGTTGGATGACTGGGTGCCGTATCAGATATTCATGTATCCCATGGCTCC
GCAGATAGAGGTACCCATCATGATGTGTGTATAGTTCTGGTTGTTGCTTC
TTTATGAGAATGTTCTTGCCT
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