DR403987

Overview
NameDR403987
Unique NameDR403987
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6144 contig Csv1_Contig6144:1..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403987 vs. ExPASy Swiss-Prot
Match: KICH_SCHPO (Putative choline kinase OS=Schizosaccharomyces pombe GN=SPAC13G7.12c PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.848e-16
Identity = 51/162 (31.48%), Postives = 84/162 (51.85%), Query Frame = 1
Query:  136 PISSPEELKKVLQSVASDWGDV-IDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKAL----LWDRLRKWVSVAKS 606
            PI   + L  + +   S W  + +   + L +  + GA+TN VY +A P   +  A  +L+RIYG  VE+F NR  E+   + ++    GP L+G F +GR E+++ + TL+   IRDPK+S  V  ++ E H+  +  P + L     W     W+  AK+
Sbjct:   34 PIFRHKVLVIIHKLAISSWNRIPLTLCNKLHIKRISGALTNAVYYVAPPEGYH--APKLLLRIYGPHVELFINRQVELENLKRLARHNIGPYLIGEFSNGRFEQYMESTTLTCKTIRDPKLSIYVGRRLCELHNFILLHPHEVLEMPAAWKNCLVWLPKAKA 193          
BLAST of DR403987 vs. ExPASy Swiss-Prot
Match: KICH_YEAST (Choline kinase OS=Saccharomyces cerevisiae GN=CKI1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.173e-11
Identity = 42/148 (28.38%), Postives = 80/148 (54.05%), Query Frame = 1
Query:  163 KVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFI-HARTLSAADIRDPKISELVAAKMREFHD----LKMPGPRKALLWDRLRKWV 591
            K +Q VA D          + ++ + GAMTN ++++ +P        ++L+RIYG  ++   +R+ E++    +S +  GP L G F +GR E+F+ +++TL+  DIR+ K S+ +A +M+E H     L       +  W ++ +W+
Sbjct:  139 KKIQPVAQD----------MNLVKISGAMTNAIFKVEYPK-----LPSLLLRIYGPNIDNIIDREYELQILARLSLKNIGPSLYGCFVNGRFEQFLENSKTLTKDDIRNWKNSQRIARRMKELHVGVPLLSSERKNGSACWQKINQWL 271          
BLAST of DR403987 vs. ExPASy Swiss-Prot
Match: CHKB_RAT (Choline/ethanolamine kinase OS=Rattus norvegicus GN=Chkb PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.173e-11
Identity = 43/156 (27.56%), Postives = 83/156 (53.21%), Query Frame = 1
Query:  214 DALQVIPLKGAMTNEVYQIAWP---AKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRK-ALLWDRLRKWVSVAKSF--CSAKDAKEFCLYTLKDEI 663
            + L V P+ G ++N +++ + P       G  R VL+R+YG  ++   +   E   F  ++ +  GP+L G F +GR+E+++ +R L   ++RDP +S  +A KM  FH ++MP  ++   L+  + +++   +     S        +Y+LKDE+
Sbjct:   67 EELSVCPVSGGLSNLLFRCSLPNHVPSMGGEPREVLLRLYGAILQGVDSLVLESVMFAILAERSLGPQLYGVFPEGRLEQYLPSRPLKTQELRDPVLSGAIATKMARFHGMEMPFTKEPRWLFGTMERYLKQIQDLPSTSLPQMNLVEMYSLKDEM 222          
BLAST of DR403987 vs. ExPASy Swiss-Prot
Match: CHKB_MOUSE (Choline/ethanolamine kinase OS=Mus musculus GN=Chkb PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.412e-11
Identity = 42/156 (26.92%), Postives = 83/156 (53.21%), Query Frame = 1
Query:  214 DALQVIPLKGAMTNEVYQIAWP---AKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRK-ALLWDRLRKWVSVAKSF--CSAKDAKEFCLYTLKDEI 663
            + L V P+ G ++N +++ + P       G  R VL+R+YG  ++   +   E   F  ++ +  GP+L G F +GR+E+++ +R L   ++RDP +S  +A +M  FH ++MP  ++   L+  + +++   +     S        +Y+LKDE+
Sbjct:   67 EELSVCPVSGGLSNLLFRCSLPNHVPSVGGEPREVLLRLYGAILQGVDSLVLESVMFAILAERSLGPQLYGVFPEGRLEQYLPSRPLKTQELRDPVLSGAIATRMARFHGMEMPFTKEPRWLFGTMERYLKQIQDLPSTSLPQMNLVEMYSLKDEM 222          
BLAST of DR403987 vs. ExPASy Swiss-Prot
Match: CHKB_HUMAN (Choline/ethanolamine kinase OS=Homo sapiens GN=CHKB PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.457e-11
Identity = 41/156 (26.28%), Postives = 85/156 (54.49%), Query Frame = 1
Query:  214 DALQVIPLKGAMTNEVYQIAWPAKNNGLA---RNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKA-LLWDRLRKWVSVAKSF--CSAKDAKEFCLYTLKDEI 663
            + L+V P+ G ++N +++ + P     +    R VL+R+YG  ++   +   E   F  ++ +  GP+L G F +GR+E++I +R L   ++R+P +S  +A KM +FH ++MP  ++   L+  + +++   +        +     +Y+LKDE+
Sbjct:   67 EELRVYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVMFAILAERSLGPQLYGVFPEGRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEM 222          
The following BLAST results are available for this feature:
BLAST of DR403987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
KICH_SCHPO7.848e-1631.48Putative choline kinase OS=Schizosaccharomyces pom... [more]
KICH_YEAST1.173e-1128.38Choline kinase OS=Saccharomyces cerevisiae GN=CKI1... [more]
CHKB_RAT1.173e-1127.56Choline/ethanolamine kinase OS=Rattus norvegicus G... [more]
CHKB_MOUSE3.412e-1126.92Choline/ethanolamine kinase OS=Mus musculus GN=Chk... [more]
CHKB_HUMAN4.457e-1126.28Choline/ethanolamine kinase OS=Homo sapiens GN=CHK... [more]
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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246O16 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246O16 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403987 ID=DR403987; Name=DR403987; organism=Citrus sinensis; type=EST; length=663bp
GGGGGCCGTGCTTTCATCGTTCCTGACAACTCAGTTTTTCTCTTCCTCTT
AGGTAAAGTTTTCTTATTTTTGTTGCAATCACCACTTTGTGCTGAGCTGA
CTACAAGAATGGCTATAAAGACAACTGAATTGTTACCAATTTCTTCTCCA
GAAGAATTAAAGAAAGTTCTTCAGTCAGTAGCTTCCGACTGGGGAGATGT
TATCGATGATTCGGATGCATTGCAGGTGATTCCATTAAAAGGTGCAATGA
CTAATGAGGTTTACCAAATAGCGTGGCCTGCAAAAAATAATGGTCTTGCT
AGAAACGTTTTGGTCCGGATTTATGGAGAAGGCGTCGAGGTTTTCTTCAA
CAGGGATGATGAAATTAGAACCTTTGAGTGCATGTCCAGCCAAGGCCAGG
GGCCTAGGCTTCTCGGGCGGTTCGGTGATGGAAGAGTTGAGGAGTTCATT
CATGCCAGGACACTGTCGGCTGCTGACATCCGTGACCCCAAAATCTCTGA
GTTGGTAGCAGCTAAGATGAGAGAATTTCATGATCTCAAAATGCCTGGTC
CAAGGAAAGCACTACTATGGGACAGACTGAGGAAATGGGTTAGTGTGGCC
AAAAGTTTCTGTTCTGCTAAAGATGCAAAGGAATTCTGCTTGTATACTCT
GAAGGATGAAATC
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