CX069698

Overview
NameCX069698
Unique NameCX069698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069698_ssr38 microsatellite CX069698_ssr38:38..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPG_OXYGR (T-complex protein 1 subunit gamma OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 5.006e-54
Identity = 108/191 (56.54%), Postives = 134/191 (70.16%), Query Frame = -3
Query:  285 DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANG-ENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQ 854
            +PKAC++LLRGASKD+LNE+ERNL DA+ VARN++ NPKLVPGGGA E+ ++  L + S  IEG++                     QWP++A A A E IPRTLAQNCG +V+R MT L+ KHAN  E  + GIDGNTG I DM+E  +WD  +VK QT KT+IEA CMLLRIDDIVSGIKK +  G+GQ
Sbjct:  370 NPKACSILLRGASKDVLNEIERNLHDALGVARNVMVNPKLVPGGGAIEMELACRLMEFSQKIEGMQ---------------------QWPFKALAGALEVIPRTLAQNCGADVVRVMTELRAKHANDKEGLYWGIDGNTGKIRDMRESNVWDPISVKQQTLKTSIEATCMLLRIDDIVSGIKKDKRGGAGQ 539          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPG_TETPY (T-complex protein 1 subunit gamma OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.358e-50
Identity = 100/189 (52.91%), Postives = 133/189 (70.37%), Query Frame = -3
Query:  288 DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSG 854
            +P+AC+++LRGASKD+LNE+ERNL D ++VA+NI  NPKLVPGGGA E+ VS+ L++ SSSIEG+                      Q P+ A A A EAIP+TLAQNCGV+V+R +T L+ KH    N +IGI+GN+G I+DM E  +W+   VK Q +KTAIE+ACMLLRIDD+VSG+KK++    G
Sbjct:  371 NPEACSIILRGASKDVLNEMERNLHDCLAVAKNIFVNPKLVPGGGAIEMEVSSHLEKISSSIEGLH---------------------QLPFRAVAYALEAIPKTLAQNCGVDVVRNITELRAKHNQEGNKFIGIEGNSGKITDMGEANVWEPIAVKLQVYKTAIESACMLLRIDDVVSGLKKQKVAKGG 538          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPG_SCHPO (T-complex protein 1 subunit gamma OS=Schizosaccharomyces pombe GN=cct3 PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.386e-50
Identity = 101/182 (55.49%), Postives = 127/182 (69.78%), Query Frame = -3
Query:  309 DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKK 854
            +PKACT+LLRG SKD++NEVERNLQDAM+VARN+  +PKL PGGGATE+ VS  L +K+ SIEG                     V QWPY A A A E IPRTL QNCG N I+ +T L+ KHA G++++ GIDG TG + DM E  +W+   VK Q+ KTAIE+AC+LLR+DDIVSG++K
Sbjct:  366 NPKACTILLRGPSKDIINEVERNLQDAMAVARNVFFHPKLSPGGGATEMAVSVRLAEKARSIEG---------------------VAQWPYRAVADAIEIIPRTLVQNCGANPIKALTELRAKHAEGQHSF-GIDGETGRVVDMHEYGVWEPEAVKLQSIKTAIESACLLLRVDDIVSGVRK 525          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPG_XENLA (T-complex protein 1 subunit gamma OS=Xenopus laevis GN=cct3 PE=2 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 7.002e-48
Identity = 101/203 (49.75%), Postives = 131/203 (64.53%), Query Frame = -3
Query:  249 DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHA-NGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSKPQIETEAD 854
            DPKACT++LRGASK++L EVERNLQDAM V RN++ +P LVPGGGA+E++V+  L +KS ++ G+E                     QWPY A A A E IPRTL QNCG + IR +T+L+ KH   G   W G+DG  G ++DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK      Q  + P+   +A+
Sbjct:  367 DPKACTIVLRGASKEILAEVERNLQDAMQVCRNVVIDPYLVPGGGASEMSVAHILTEKSKTMTGVE---------------------QWPYRAVAQALEVIPRTLIQNCGASTIRILTSLRAKHTQEGCQTW-GVDGEAGVLADMKELGIWEPLAVKLQTYKTAVETAILLLRIDDIVSGHKKKGEDHGRQPAAAPEAPQQAE 547          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPG_RAT (T-complex protein 1 subunit gamma OS=Rattus norvegicus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.194e-47
Identity = 101/198 (51.01%), Postives = 128/198 (64.65%), Query Frame = -3
Query:  285 DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK--------QAPGSGQ 854
            DPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E                     QWPY A A A E IPRTL QNCG + IR +T+L+ KH        G++G TG + DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK         AP +GQ
Sbjct:  368 DPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVE---------------------QWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQNRQTGAPDAGQ 544          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPG_PONAB (T-complex protein 1 subunit gamma OS=Pongo abelii GN=CCT3 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.194e-47
Identity = 101/198 (51.01%), Postives = 128/198 (64.65%), Query Frame = -3
Query:  285 DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK--------QAPGSGQ 854
            DPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E                     QWPY A A A E IPRTL QNCG + IR +T+L+ KH        G++G TG + DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK         AP +GQ
Sbjct:  368 DPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVE---------------------QWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQGGAPDAGQ 544          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPG_MOUSE (T-complex protein 1 subunit gamma OS=Mus musculus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.194e-47
Identity = 101/198 (51.01%), Postives = 128/198 (64.65%), Query Frame = -3
Query:  285 DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK--------QAPGSGQ 854
            DPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E                     QWPY A A A E IPRTL QNCG + IR +T+L+ KH        G++G TG + DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK         AP +GQ
Sbjct:  368 DPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVE---------------------QWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQESCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQNRQTGAPDAGQ 544          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPG_HUMAN (T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4)

HSP 1 Score: 190.274 bits (482), Expect = 1.194e-47
Identity = 101/198 (51.01%), Postives = 128/198 (64.65%), Query Frame = -3
Query:  285 DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK--------QAPGSGQ 854
            DPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E                     QWPY A A A E IPRTL QNCG + IR +T+L+ KH        G++G TG + DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK         AP +GQ
Sbjct:  368 DPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVE---------------------QWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQGGAPDAGQ 544          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPG_BOVIN (T-complex protein 1 subunit gamma OS=Bos taurus GN=CCT3 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.194e-47
Identity = 101/198 (51.01%), Postives = 128/198 (64.65%), Query Frame = -3
Query:  285 DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK--------QAPGSGQ 854
            DPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E                     QWPY A A A E IPRTL QNCG + IR +T+L+ KH        G++G TG + DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK         AP +GQ
Sbjct:  368 DPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVE---------------------QWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQGGAPDAGQ 544          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPG_MACFA (T-complex protein 1 subunit gamma OS=Macaca fascicularis GN=CCT3 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.475e-47
Identity = 100/198 (50.51%), Postives = 128/198 (64.65%), Query Frame = -3
Query:  285 DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK--------QAPGSGQ 854
            DPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E                     QWPY A A A E IPRTL QNCG + IR +T+L+ KH        G++G TG + D+KE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK         AP +GQ
Sbjct:  368 DPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVE---------------------QWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDVKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQGGAPDAGQ 544          
The following BLAST results are available for this feature:
BLAST of CX069698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
TCPG_OXYGR5.006e-5456.54T-complex protein 1 subunit gamma OS=Oxytricha gra... [more]
TCPG_TETPY3.358e-5052.91T-complex protein 1 subunit gamma OS=Tetrahymena p... [more]
TCPG_SCHPO4.386e-5055.49T-complex protein 1 subunit gamma OS=Schizosacchar... [more]
TCPG_XENLA7.002e-4849.75T-complex protein 1 subunit gamma OS=Xenopus laevi... [more]
TCPG_RAT1.194e-4751.01T-complex protein 1 subunit gamma OS=Rattus norveg... [more]
TCPG_PONAB1.194e-4751.01T-complex protein 1 subunit gamma OS=Pongo abelii ... [more]
TCPG_MOUSE1.194e-4751.01T-complex protein 1 subunit gamma OS=Mus musculus ... [more]
TCPG_HUMAN1.194e-4751.01T-complex protein 1 subunit gamma OS=Homo sapiens ... [more]
TCPG_BOVIN1.194e-4751.01T-complex protein 1 subunit gamma OS=Bos taurus GN... [more]
TCPG_MACFA3.475e-4750.51T-complex protein 1 subunit gamma OS=Macaca fascic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12C05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12C05-F10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069698 ID=CX069698; Name=CX069698; organism=Citrus sinensis; type=EST; length=856bp
CTTTTTTTTTTTTTTTATCCAAAAACAGGATGTTAAAATATATATATATA
TTGCAGAGCATATCACAGCTTCCCAGTTTGTCTACAATGGCTAAAACATT
GGCGCAATATCACAAAATTTGGAGGAAAAGCTCAGCAAAATCATTAGACC
GCCAACAGAACAATAAACCAACATTTTTTCAAATAATTAAACTGCATAGT
CGTTGACAATAACATTGTCTAATCAGGGAGTATTTGCTCACTATCTGCAT
CTGCCTCCGTCTCAATCTGGGGCTTCGATGGAGCTTGGCCTGAGCCAGGG
GCCTGTTTCTTCTTAATTCCACTGACAATGTCATCAATCCTCAGAAGCAT
GCAAGCAGCTTCAATTGCTGTCTTAAATGTCTGTGCTTTCACATTATATG
CATCCCAGATCTTCCCCTCTTTCATGTCAGAAATTGCACCAGTGTTTCCA
TCTATGCCGATCCATGCATTTTCACCATTTGCATGTTTTCCTTGCAGAGC
AGTCATAGTCCGAATTACATTAACGCCACAATTCTGAGCCAAAGTTCTTG
GAATAGCCTCAAAAGCAATAGCAGCAGCTTCGTAAGGCCACTGTTTTACA
ATGATGAAGCATGGATGTCAGGCTGATGAATAACAAAAACGGCGGAAAAG
CCACTTTTCGATGCCTTCGATTGAGGAACTCTTTTGTTTTAGAGTGGCAG
ACACTGTTAATTCTGTAGCCCCACCACCAGGTACTAGTTTTGGATTCTTG
ATTATGTTTCTTGCCACAGACATTGCATCCTGCAAATTCCTTTCCACTTC
ATTCAGGAGATCCTTACTAGCACCTCTTAAGAGTACAGTACAAGCTTTTG
GATCTT
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