CX069686

Overview
NameCX069686
Unique NameCX069686
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7124 contig Csv1_Contig7124:1025..1766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069686 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 7.351e-58
Identity = 108/113 (95.58%), Postives = 113/113 (100.00%), Query Frame = -2
Query:  380 KAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 718
            +AA+FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+ELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIKNVEKKDP+G
Sbjct:  324 EAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 436          

HSP 2 Score: 22.3274 bits (46), Expect = 7.351e-58
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = -1
Query:  714 NSKDDPARES 743
            NSKDDPA+E+
Sbjct:  316 NSKDDPAKEA 325          
BLAST of CX069686 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 3.610e-57
Identity = 105/113 (92.92%), Postives = 113/113 (100.00%), Query Frame = -2
Query:  380 KAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 718
            +AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+EL+TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIK+VEKKDP+G
Sbjct:  324 EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436          

HSP 2 Score: 22.3274 bits (46), Expect = 3.610e-57
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = -1
Query:  714 NSKDDPARES 743
            NSKDDPA+E+
Sbjct:  316 NSKDDPAKEA 325          
BLAST of CX069686 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.605e-57
Identity = 105/112 (93.75%), Postives = 112/112 (100.00%), Query Frame = -2
Query:  380 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 715
            AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+EL+TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIK+VEKKDP+G
Sbjct:  325 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436          
BLAST of CX069686 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 1.043e-56
Identity = 105/113 (92.92%), Postives = 112/113 (99.12%), Query Frame = -2
Query:  380 KAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 718
            +AANFT+QVII+NHPGQIGNGYAPVLDCHTSHIAVKF+EL+TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIKNVEKKDP+G
Sbjct:  324 EAANFTAQVIIINHPGQIGNGYAPVLDCHTSHIAVKFAELMTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 436          

HSP 2 Score: 22.3274 bits (46), Expect = 1.043e-56
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = -1
Query:  714 NSKDDPARES 743
            NSKDDPA+E+
Sbjct:  316 NSKDDPAKEA 325          
BLAST of CX069686 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.124e-56
Identity = 106/113 (93.81%), Postives = 112/113 (99.12%), Query Frame = -2
Query:  380 KAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 718
            +AA+FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+ELVTKIDRRSGKELEKEPKFLKNGDAGMVKM+PTKPMVVETFS YPPLGRFAVRDMRQTVAVGVIK+VEKKDP+G
Sbjct:  324 EAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436          
BLAST of CX069686 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.359e-56
Identity = 106/113 (93.81%), Postives = 111/113 (98.23%), Query Frame = -2
Query:  380 KAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 718
            +AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+E++TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETFS YPPLGRFAVRDMRQTVAVGVIK+VEKKDPSG
Sbjct:  324 EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSAYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSG 436          

HSP 2 Score: 22.3274 bits (46), Expect = 1.359e-56
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = -1
Query:  714 NSKDDPARES 743
            NSKDDPA+E+
Sbjct:  316 NSKDDPAKEA 325          
BLAST of CX069686 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.504e-56
Identity = 104/112 (92.86%), Postives = 112/112 (100.00%), Query Frame = -2
Query:  380 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 715
            AA+FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+E++TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIKNV+KKDP+G
Sbjct:  325 AASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVDKKDPTG 436          
BLAST of CX069686 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.271e-56
Identity = 104/112 (92.86%), Postives = 111/112 (99.11%), Query Frame = -2
Query:  380 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 715
            AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSE++TKIDRRSGKE+EKEPKFLKNGDAGMVKM PTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIK+V+KKDP+G
Sbjct:  325 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTG 436          
BLAST of CX069686 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 9.514e-56
Identity = 102/112 (91.07%), Postives = 112/112 (100.00%), Query Frame = -2
Query:  380 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 715
            AA+FT+QVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+E++TKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGV+KNV+KKDP+G
Sbjct:  325 AASFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVVKNVDKKDPTG 436          
BLAST of CX069686 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 3.277e-55
Identity = 103/113 (91.15%), Postives = 109/113 (96.46%), Query Frame = -2
Query:  380 KAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 718
            +AANFT+QVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+E+ TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETF  YPPLGRFAVRDMRQTVAVGVIK+VEKKDP+G
Sbjct:  324 EAANFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFMSYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436          

HSP 2 Score: 22.3274 bits (46), Expect = 3.277e-55
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = -1
Query:  714 NSKDDPARES 743
            NSKDDPA+E+
Sbjct:  316 NSKDDPAKEA 325          
The following BLAST results are available for this feature:
BLAST of CX069686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 167
Match NameE-valueIdentityDescription
EF1A_ORYSJ7.351e-5895.58Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_VICFA3.610e-5792.92Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A_PEA8.605e-5793.75Elongation factor 1-alpha OS=Pisum sativum PE=2 SV... [more]
EF1A_SOYBN1.043e-5692.92Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A_MAIZE1.124e-5693.81Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A_MANES1.359e-5693.81Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A_TOBAC2.504e-5692.86Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A_ARATH4.271e-5692.86Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A_SOLLC9.514e-5691.07Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]
EF1A2_DAUCA3.277e-5591.15Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12B11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12B11-D22-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069686 ID=CX069686; Name=CX069686; organism=Citrus sinensis; type=EST; length=743bp
CCCCCCCTCTTTTTTGAAAAATGAAAAGTACATTTTTATTCCGCAGAAAC
AACACAATGACAAAACTTCTGAGCCTATTCAGATGAAACCGAACCACCTC
AAGTATCAATACAAACAAAGACCATAACTATTAATAATATTGAGACTCCA
GGTTAGAGCTGCGCCACCGCCTGTCAAGCACCCAATTCTGGGAATCGGTA
CCCGACACCAAAGGCAACAAACTAAAACCTACAAAGGAAAGCAAGCATCG
AACTATAACAGTACCAAAAATAACCAAGTTTGTATAACTACAATTATTAA
AATAGACTCCATCTGCGGATAAAGCAACATTAACCAACCCGATTCACTTC
TTCTTGGCTGCAGACTTGGTGACCTTGGCACCTGATGGATCCTTCTTTTC
AACATTCTTAATCACACCAACAGCAACAGTCTGACGCATGTCCCTAACGG
CAAAACGACCAAGAGGTGGGTAGTCAGAGAAGGTTTCAACAACCATGGGC
TTGGTGGGAATCATCTTAACCATTCCAGCATCTCCATTCTTCAAGAACTT
GGGCTCCTTCTCAAGCTCCTTGCCTGATCGCCTATCAATCTTCGTCACGA
GCTCAGAAAACTTGACGGCAATGTGGGAGGTGTGGCAGTCAAGCACTGGG
GCATATCCATTTCCAATCTGGCCAGGGTGGTTCATGATGATGACCTGTGA
GGTGAAGTTGGCAGCTTTCCCTGGCCGGATCATCCTTCGAGTT
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