CX069679

Overview
NameCX069679
Unique NameCX069679
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig185 contig Csv1_Contig185:651..1371. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069679 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.107e-37
Identity = 71/116 (61.21%), Postives = 90/116 (77.59%), Query Frame = -1
Query:  374 YATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFECVINPLEAERLKVHDPVTF 721
            Y+TIWDGS WAT+GGKY VNYKYAPYV++F+D +LHGC+ DP E+  S C       + + + ++ SQR KME FR+KHMTYSYCYD +RYKV   ECV+NP EA+RL+V+DPVTF
Sbjct:  194 YSTIWDGSKWATDGGKYGVNYKYAPYVSQFTDLILHGCAVDPTEKFPS-CKDEAVQNLRLASEITESQRNKMEIFRQKHMTYSYCYDHMRYKVVLSECVVNPAEAKRLRVYDPVTF 308          
BLAST of CX069679 vs. ExPASy Swiss-Prot
Match: XTH27_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.888e-37
Identity = 72/116 (62.07%), Postives = 85/116 (73.28%), Query Frame = -1
Query:  374 YATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFECVINPLEAERLKVHDPVTF 721
            Y TIWDGS WATNGGKY VNYKYAPY+  FSD VLHGC  DPIEQ   +CD   +  +     ++PSQR KM+ FRR+ MTYSYCYD+ RY V   ECV+NP EA+RL+V+DPV F
Sbjct:  194 YTTIWDGSKWATNGGKYGVNYKYAPYIARFSDLVLHGCPVDPIEQ-FPRCDEGAAEDMRAAQEITPSQRSKMDVFRRRLMTYSYCYDRARYNVALSECVVNPAEAQRLRVYDPVRF 308          
BLAST of CX069679 vs. ExPASy Swiss-Prot
Match: XTH30_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana GN=XTH30 PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 3.021e-27
Identity = 59/113 (52.21%), Postives = 71/113 (62.83%), Query Frame = -1
Query:  395 YATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKC----DITESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFECVINPLEAERLK 721
            YATIWD SDWAT+GGKY+ NYK+AP+V EF  F L GCS DPI++    C    D  ES   S    ++  QR  M  FR++ M YSYCYD +RY  P  ECVI P E +R K
Sbjct:  195 YATIWDASDWATSGGKYKANYKFAPFVAEFKSFSLDGCSVDPIQEVPMDCSDSVDFLESQDYS---SINSHQRAAMRRFRQRFMYYSYCYDTLRYPEPLPECVIVPAEKDRFK 304          
BLAST of CX069679 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.112e-21
Identity = 52/121 (42.98%), Postives = 71/121 (58.68%), Query Frame = -1
Query:  395 YATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFD---PIEQTSS--------KCDITESSKVSIP-TGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFECVINPLEAERLK 721
            YATIWD S WAT+GGK+ V+Y ++P+V+EF D  L GC+     P E  ++         C +++   +S   + +SP Q   M  FR ++M YSYCYD IRY VPP ECVI   E  R +
Sbjct:  203 YATIWDASSWATSGGKFGVDYTFSPFVSEFKDIALDGCNVSDSFPGENNNNNIGNYNNINCSVSDQFLMSNDYSTISPKQATAMRRFRERYMYYSYCYDTIRYSVPPPECVIVTAEKNRFR 323          
BLAST of CX069679 vs. ExPASy Swiss-Prot
Match: XTH33_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.272e-17
Identity = 50/106 (47.17%), Postives = 61/106 (57.55%), Query Frame = -1
Query:  428 YATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQT-SSKCDITESSKVSIP-------TGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFEC 721
            Y T+WDGS+WAT GGKY VNYKYAP+V   +D  L GCS +    T S  C  +  S  S+          +S +Q   M+  RRK M YSYC D+ RYKV P EC
Sbjct:  204 YVTVWDGSEWATKGGKYPVNYKYAPFVVSVADVELSGCSVNNGSSTGSGPCTKSGGSISSLDPVDGQDFATLSKNQINAMDWARRKLMFYSYCSDKPRYKVMPAEC 309          
BLAST of CX069679 vs. ExPASy Swiss-Prot
Match: XTH2_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=XTH2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.981e-16
Identity = 38/98 (38.78%), Postives = 59/98 (60.20%), Query Frame = -1
Query:  428 ATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITES-SKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFEC 718
            A++W+G +WAT+GGK ++N+ YAP+  ++  F  HGC  +     ++ C  T         + +S +++  MEN R K+MTY YC D+ RY VPP EC
Sbjct:  191 ASLWNGENWATSGGKEKINWAYAPFKAQYQGFSDHGCHVNGQSNNANVCGSTRYWWNTRTYSQLSANEQKVMENVRAKYMTYDYCSDRPRYPVPPSEC 288          
BLAST of CX069679 vs. ExPASy Swiss-Prot
Match: XTH3_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=XTH3 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.118e-16
Identity = 39/101 (38.61%), Postives = 59/101 (58.42%), Query Frame = -1
Query:  428 ATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTG----VSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFEC 718
            A++W+G DWAT+GG+ +VN+ Y+P++  F DF L GC+ D        C   ESS      G    +S +++   E+ R K+M Y YC D+ +Y+ PP EC
Sbjct:  192 ASLWNGDDWATDGGRTKVNWSYSPFIAHFRDFALSGCNIDGRSNNVGAC---ESSNYWWNAGNYQRLSGNEQKLYEHVRSKYMNYDYCTDRSKYQTPPREC 289          
BLAST of CX069679 vs. ExPASy Swiss-Prot
Match: XTH1_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.586e-12
Identity = 37/103 (35.92%), Postives = 58/103 (56.31%), Query Frame = -1
Query:  419 TIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTG----VSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFECVIN 715
            ++W+G +WAT+GGK ++N+  AP+   F  F   GC       T+++ +   SS     TG    +S S++    N R+K+M Y YC D++R+ VPP EC  N
Sbjct:  198 SLWNGENWATDGGKSKINWSLAPFKANFQGFNNSGCF------TNAEKNACGSSAYWWNTGSYSKLSDSEQKAYTNVRQKYMNYDYCSDKVRFHVPPSECKWN 294          
BLAST of CX069679 vs. ExPASy Swiss-Prot
Match: XTH9_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 9 OS=Arabidopsis thaliana GN=XTH9 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11
Identity = 34/100 (34.00%), Postives = 52/100 (52.00%), Query Frame = -1
Query:  428 YATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPT--GVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFEC 721
            Y++IW+  DWAT GG  + ++ +AP+V  + +F +  C   P     SKC+  +      PT   +S  Q  ++   R  HM Y YC+D  R+ V P EC
Sbjct:  186 YSSIWNADDWATQGGLVKTDWSHAPFVASYKEFQIDACEI-PTTTDLSKCNGDQKFWWDEPTVSELSLHQNHQLIWVRANHMIYDYCFDATRFPVTPLEC 284          
BLAST of CX069679 vs. ExPASy Swiss-Prot
Match: XTH7_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 34/99 (34.34%), Postives = 51/99 (51.52%), Query Frame = -1
Query:  428 YATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSF-DPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFEC 721
            Y+T+W+  DWAT GG  ++N+  AP+   + DF + GC    P +  ++  +  E S       +SP +       R  HM Y YC D+ R+ VPP EC
Sbjct:  194 YSTLWEADDWATRGGIEKINWSRAPFYAYYKDFDIEGCPVPGPADCPANSKNWWEGSAYH---QLSPVEARSYRWVRVNHMVYDYCTDKSRFPVPPPEC 289          
The following BLAST results are available for this feature:
BLAST of CX069679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
XTH28_ARATH1.107e-3761.21Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH27_ARATH1.888e-3762.07Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH30_ARATH3.021e-2752.21Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH29_ARATH1.112e-2142.98Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH33_ARATH1.272e-1747.17Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH2_ARATH6.981e-1638.78Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH3_ARATH9.118e-1638.61Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH1_ARATH3.586e-1235.92Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH9_ARATH1.363e-1134.00Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH7_ARATH6.762e-1134.34Probable xyloglucan endotransglucosylase/hydrolase... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_12B03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12B03-D6-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069679 ID=CX069679; Name=CX069679; organism=Citrus sinensis; type=EST; length=721bp
TTTTTTTTTTAAAATAAAAATCATCACCGAATTCAATACATAAAGGTAAG
GCCAAAAGACAGCATTCATCAACAATGATAAAATGAATAGGCAATGAACT
ATACACATACATACCCACCACCAACCATTCCAATAAACCTTCCTACCACC
CTCAATAAAATCTGTGCTATCTGATATCTCCTTGTCTGTCTCTATACACA
AAAATAGCAGAACCCCACTTCCGTAAATCAAACTCAAAGGATATTAGAAG
AGGAGAGATGACCAATTAGTGCTCCTGCATGTAGCATAATAGTCCTCCTC
AAACGTCATTGGCCTTGGTTCCGCTTGATCGGCTTCGGTGGTGTCGTTTC
CCGTGATGGCGCCGCCCTCCCCCGAATGTAACTGGATCGTGTACTTTAAG
GCGCTCCGCCTCAAGGGGGTTGATCACACACTCAAATGGAGGAACTTTGT
ATCGAATTTGGTCATAGCAGTAGGAATAGGTCATATGCTTCCTCCTAAAG
TTTTCCATTTTAATTCTCTGTGATGGGGAGACGCCAGTAGGGATTGATAC
TTTGGAACTTTCGGTTATGTCACACTTGGAAGAAGTTTGCTCAATAGGAT
CAAATGAACATCCGTGGAGTACGAAGTCAGAGAATTCAGTCACATAGGGA
GCATATTTGTAGTTCACTCGGTATTTGCCACCATTTGTAGCCCAATCAGA
GCCATCCCAGATTGTGGCGTA
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