CX069677

Overview
NameCX069677
Unique NameCX069677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4021 contig Csv1_Contig4021:246..1066. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_CITSI (30S ribosomal protein S3, chloroplastic OS=Citrus sinensis GN=rps3 PE=3 SV=1)

HSP 1 Score: 399.053 bits (1024), Expect = 1.599e-110
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 3 
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEKK 602
            SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEKK
Sbjct:   20 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEKK 219
[Close]
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_AETGR (30S ribosomal protein S3, chloroplastic OS=Aethionema grandiflora GN=rps3 PE=3 SV=1)

HSP 1 Score: 363.614 bits (932), Expect = 7.445e-100
Identity = 177/199 (88.94%), Postives = 194/199 (97.49%), Query Frame = 3 
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            SLWFA+PK YCEGL+ED+KIR+ IKNY++KNIRISSG+EGIARIEIQKRIDLIQVIIY+GFPKLL+E++PRR+EELQMNVQKELNCVNRK+NIAITRI+ PYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQA+TKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:   20 SLWFAQPKKYCEGLEEDKKIRDCIKNYVQKNIRISSGMEGIARIEIQKRIDLIQVIIYMGFPKLLIEDKPRRVEELQMNVQKELNCVNRKLNIAITRISTPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
[Close]
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_AETCO (30S ribosomal protein S3, chloroplastic OS=Aethionema cordifolium GN=rps3 PE=3 SV=1)

HSP 1 Score: 363.614 bits (932), Expect = 7.445e-100
Identity = 177/199 (88.94%), Postives = 194/199 (97.49%), Query Frame = 3 
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            SLWFA+PK YCEGL+ED+KIR+ IKNY++KNIRISSG+EGIARIEIQKRIDLIQVIIY+GFPKLL+E++PRR+EELQMNVQKELNCVNRK+NIAITRI+ PYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQA+TKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:   20 SLWFAQPKKYCEGLEEDKKIRDCIKNYVQKNIRISSGMEGIARIEIQKRIDLIQVIIYMGFPKLLIEDKPRRVEELQMNVQKELNCVNRKLNIAITRISTPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
[Close]
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_LOBMA (30S ribosomal protein S3, chloroplastic OS=Lobularia maritima GN=rps3 PE=3 SV=1)

HSP 1 Score: 359.377 bits (921), Expect = 1.404e-98
Identity = 175/199 (87.94%), Postives = 193/199 (96.98%), Query Frame = 3 
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            SLWFA+PK Y EGL+ED+KIR+ IKNY++KNIRISSG+EGIARIEIQKRIDLIQ+IIY+GFPKLL+E++PRR+EELQM VQKELNCVNRK+NIAITRI+NPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQA+TKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:   20 SLWFAQPKKYSEGLEEDKKIRDCIKNYVQKNIRISSGMEGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMTVQKELNCVNRKLNIAITRISNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
[Close]
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_DRANE (30S ribosomal protein S3, chloroplastic OS=Draba nemorosa GN=rps3 PE=3 SV=1)

HSP 1 Score: 358.992 bits (920), Expect = 1.834e-98
Identity = 175/199 (87.94%), Postives = 193/199 (96.98%), Query Frame = 3 
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            SLWFA+PK Y EGL+ED+KIR+ IKNY++ NIRISSG+EGIARIEIQKRIDLIQ+IIY+GFPKLL+E++PRRIEELQ+NVQKELNCVNRK+NIAITRI+NPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQA+TKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:   20 SLWFAQPKKYSEGLEEDKKIRDCIKNYVQNNIRISSGMEGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRIEELQINVQKELNCVNRKLNIAITRISNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIDAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
[Close]
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_VITVI (30S ribosomal protein S3, chloroplastic OS=Vitis vinifera GN=rps3 PE=3 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 3.128e-98
Identity = 178/199 (89.45%), Postives = 191/199 (95.98%), Query Frame = 3 
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            SLWFA+PKNY +GLQEDQKIR+ IKNY++KNIRISSGVEGIARIEIQKRIDLIQVIIY+GFPKLL+E +PRRIEELQMNVQKELN VNRK+NIAITRIT PYGHPNILAEFIAGQL+NRVSFRKA+KKAIELTEQADTKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSY VRTIYGVLGIKIWIFVDE+
Sbjct:   20 SLWFAQPKNYSKGLQEDQKIRDCIKNYVQKNIRISSGVEGIARIEIQKRIDLIQVIIYMGFPKLLVEGKPRRIEELQMNVQKELNYVNRKLNIAITRITKPYGHPNILAEFIAGQLRNRVSFRKAIKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYRVRTIYGVLGIKIWIFVDEE 218
[Close]
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_OLIPU (30S ribosomal protein S3, chloroplastic OS=Olimarabidopsis pumila GN=rps3 PE=3 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 3.128e-98
Identity = 175/199 (87.94%), Postives = 193/199 (96.98%), Query Frame = 3 
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            SLWFA+PK Y EGL+ED+KIR+ IKNY++KNIRISSG+EGIARIEIQKRIDLIQ+IIY+GFPKLL+E++PRR+EELQMNVQKELNCVNRK+NIAITRI+NPYG PNILAEFIAGQLKNRVSFRKAMKKAIELTEQA+TKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:   20 SLWFAQPKKYSEGLEEDKKIRDCIKNYVQKNIRISSGMEGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNVQKELNCVNRKLNIAITRISNPYGDPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
[Close]
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_NASOF (30S ribosomal protein S3, chloroplastic OS=Nasturtium officinale GN=rps3 PE=3 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 3.128e-98
Identity = 175/199 (87.94%), Postives = 193/199 (96.98%), Query Frame = 3 
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            SLWFA+PK Y EGL+ED+KIR+ IKNY++KNIRISSG+EGIARIEIQKRIDLIQ+IIY+GFPKLL+E++PRR+EELQMNVQKELNCVNRK+NIAITRI+NPYG PNILAEFIAGQLKNRVSFRKAMKKAIELTEQA+TKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:   20 SLWFAQPKKYSEGLEEDKKIRDCIKNYVQKNIRISSGMEGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNVQKELNCVNRKLNIAITRISNPYGDPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
[Close]
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_CAPBU (30S ribosomal protein S3, chloroplastic OS=Capsella bursa-pastoris GN=rps3 PE=3 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 3.128e-98
Identity = 175/199 (87.94%), Postives = 193/199 (96.98%), Query Frame = 3 
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            SLWFA+PK Y EGL+ED+KIR+ IKNY++KNIRISSG+EGIARIEIQKRIDLIQ+IIY+GFPKLL+E++PRR+EELQMNVQKELNCVNRK+NIAITRI+NPYG PNILAEFIAGQLKNRVSFRKAMKKAIELTEQA+TKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:   20 SLWFAQPKKYSEGLEEDKKIRDCIKNYVQKNIRISSGMEGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNVQKELNCVNRKLNIAITRISNPYGDPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
[Close]
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_ARATH (30S ribosomal protein S3, chloroplastic OS=Arabidopsis thaliana GN=rps3 PE=3 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 3.128e-98
Identity = 175/199 (87.94%), Postives = 193/199 (96.98%), Query Frame = 3 
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            SLWFA+PK Y EGL+ED+KIR+ IKNY++KNIRISSG+EGIARIEIQKRIDLIQ+IIY+GFPKLL+E++PRR+EELQMNVQKELNCVNRK+NIAITRI+NPYG PNILAEFIAGQLKNRVSFRKAMKKAIELTEQA+TKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:   20 SLWFAQPKKYSEGLEEDKKIRDCIKNYVQKNIRISSGMEGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNVQKELNCVNRKLNIAITRISNPYGDPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
The following BLAST results are available for this feature:
BLAST of CX069677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR3_CITSI1.599e-110100.0030S ribosomal protein S3, chloroplastic OS=Citrus ... [more]
RR3_AETGR7.445e-10088.9430S ribosomal protein S3, chloroplastic OS=Aethion... [more]
RR3_AETCO7.445e-10088.9430S ribosomal protein S3, chloroplastic OS=Aethion... [more]
RR3_LOBMA1.404e-9887.9430S ribosomal protein S3, chloroplastic OS=Lobular... [more]
RR3_DRANE1.834e-9887.9430S ribosomal protein S3, chloroplastic OS=Draba n... [more]
RR3_VITVI3.128e-9889.4530S ribosomal protein S3, chloroplastic OS=Vitis v... [more]
RR3_OLIPU3.128e-9887.9430S ribosomal protein S3, chloroplastic OS=Olimara... [more]
RR3_NASOF3.128e-9887.9430S ribosomal protein S3, chloroplastic OS=Nasturt... [more]
RR3_CAPBU3.128e-9887.9430S ribosomal protein S3, chloroplastic OS=Capsell... [more]
RR3_ARATH3.128e-9887.9430S ribosomal protein S3, chloroplastic OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12B02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12B02-D4-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069677 ID=CX069677; Name=CX069677; organism=Citrus sinensis; type=EST; length=821bp
ATTCTCTTTGGTTTGCAAAACCAAAAAACTATTGCGAGGGTCTACAAGAA
GATCAAAAAATACGAAACTTTATTAAGAATTATATAAAAAAAAATATCAG
AATATCTTCCGGTGTTGAGGGAATTGCACGGATAGAGATTCAAAAAAGAA
TTGATCTAATTCAAGTTATAATCTATATAGGGTTCCCAAAATTATTACTA
GAAAATAGACCGCGAAGAATTGAAGAATTACAGATGAATGTACAAAAAGA
ACTTAATTGTGTGAATCGAAAAATAAACATTGCTATTACACGAATTACAA
ATCCTTATGGACACCCCAATATTCTTGCCGAATTTATAGCCGGACAATTA
AAAAATAGAGTTTCTTTTCGAAAAGCAATGAAAAAAGCTATTGAATTAAC
GGAACAGGCCGATACAAAAGGAATTCAAGTACAAATTGCAGGGCGTCTTG
ACGGAAAAGAAATTGCGCGCGCCGAATGGATCAGAGAAGGTAGAGTTCCT
CTACAAACCATTGGAGCTAAAATTGATTATTGTTCCTATACGGTTCGAAC
TATCTACGGGGTATTGGGAATCAAAATTTGGATATTTGTAGACGAAAAAA
AATAAGAGTTTACGGGTCTTTAGAGCCCCCCCATTAATGGAAATAAACCA
AACAAAGAACGAGCTCTTTTTATCTTCAATCAAAACAAAAATGAGAAATT
CCGCAATTCTATAGGGTTGAATAAAAATTCGATTGATTTTTTTTTTTTTA
TATAATTGCTATGCTTAGTGTGCGACTCGTTGGTTTTTTTTAGGGCTAGG
ATTCCAAAAAATGGACCGTCC
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