CX069676

Overview
NameCX069676
Unique NameCX069676
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1652 contig Csv1_Contig1652:767..1643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_CITSI (30S ribosomal protein S8, chloroplastic OS=Citrus sinensis GN=rps8 PE=3 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.623e-71
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = -2 
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW
Sbjct:    1 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 136
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_EUCGG (30S ribosomal protein S8, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rps8 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.861e-59
Identity = 117/136 (86.03%), Postives = 124/136 (91.18%), Query Frame = -2 
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG+DTIADIITSIRNADMNRKGT++IASTNITEN+VKILLREGFI+N RK    +N K FLVLTLRHRRNRKGPYR ILNLKRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:    1 MGRDTIADIITSIRNADMNRKGTIQIASTNITENIVKILLREGFIKNVRK--HQENNKYFLVLTLRHRRNRKGPYRTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCYIW 134
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_PANGI (30S ribosomal protein S8, chloroplastic OS=Panax ginseng GN=rps8 PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.576e-58
Identity = 117/136 (86.03%), Postives = 124/136 (91.18%), Query Frame = -2 
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG+DTIADIITSIRNADM++K  VRIASTNITENVVKILLREGFIEN RK    +NKK+FLVLTLRHRRNRK PYR ILNLKRISRPGLRIY NY+RIPRIL G+GIVILSTSRGIMTDR ARLERIGGEILCYIW
Sbjct:    1 MGRDTIADIITSIRNADMDKKRVVRIASTNITENVVKILLREGFIENVRK--HQENKKDFLVLTLRHRRNRKRPYRNILNLKRISRPGLRIYSNYQRIPRILGGIGIVILSTSRGIMTDREARLERIGGEILCYIW 134
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_VITVI (30S ribosomal protein S8, chloroplastic OS=Vitis vinifera GN=rps8 PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.021e-57
Identity = 116/136 (85.29%), Postives = 122/136 (89.71%), Query Frame = -2 
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG+DTIADIITSIRN DM+RK TVRIASTNITEN+VKILLREGFIEN RK    ++ K FLVLTLRHRRNRKG YR ILNLKRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLERIGGEILCYIW
Sbjct:    1 MGRDTIADIITSIRNVDMDRKVTVRIASTNITENIVKILLREGFIENVRK--HQESNKYFLVLTLRHRRNRKGTYRTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLERIGGEILCYIW 134
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_GOSBA (30S ribosomal protein S8, chloroplastic OS=Gossypium barbadense GN=rps8 PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 6.619e-57
Identity = 112/136 (82.35%), Postives = 122/136 (89.71%), Query Frame = -2 
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MGKDTIADIITSIRNADMNRKGT++I STNITEN+V+ILLREGFI+N RK    +  K FLVLTLRHRRNRKGP+R ILNL+RISRPGLRIY NY++IPRIL GMGIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:    1 MGKDTIADIITSIRNADMNRKGTIQIGSTNITENIVQILLREGFIDNVRK--HRERNKYFLVLTLRHRRNRKGPHRTILNLRRISRPGLRIYSNYQQIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCYIW 134
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_CUCSA (30S ribosomal protein S8, chloroplastic OS=Cucumis sativus GN=rps8 PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 8.645e-57
Identity = 112/136 (82.35%), Postives = 122/136 (89.71%), Query Frame = -2 
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MGKDTIA+IITSIRNADMNRKG VRI +TNITEN+VKILLREGFIEN RK    ++ K+F VLTLRHRRNRKGPY+ ILNLKRISRPGLRIY NY++IPRIL GMGIVILSTSRGIMTDR ARL+ IGGEILCYIW
Sbjct:    1 MGKDTIANIITSIRNADMNRKGMVRIPATNITENIVKILLREGFIENVRK--HRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGGMGIVILSTSRGIMTDREARLQGIGGEILCYIW 134
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_SOLTU (30S ribosomal protein S8, chloroplastic OS=Solanum tuberosum GN=rps8 PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.926e-56
Identity = 114/136 (83.82%), Postives = 121/136 (88.97%), Query Frame = -2 
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG+DTIA+IITSIRNADM+RK  VRIASTNITEN+V+ILLREGFIEN RK    +N K FLVLTLRHRRNRK PYR ILNLKRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:    1 MGRDTIAEIITSIRNADMDRKRVVRIASTNITENIVQILLREGFIENVRK--HRENNKYFLVLTLRHRRNRKRPYRNILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCYIW 134
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_SOLLC (30S ribosomal protein S8, chloroplastic OS=Solanum lycopersicum GN=rps8 PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.926e-56
Identity = 114/136 (83.82%), Postives = 121/136 (88.97%), Query Frame = -2 
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG+DTIA+IITSIRNADM+RK  VRIASTNITEN+V+ILLREGFIEN RK    +N K FLVLTLRHRRNRK PYR ILNLKRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:    1 MGRDTIAEIITSIRNADMDRKRVVRIASTNITENIVQILLREGFIENVRK--HRENNKYFLVLTLRHRRNRKRPYRNILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCYIW 134
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_SOLBU (30S ribosomal protein S8, chloroplastic OS=Solanum bulbocastanum GN=rps8 PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.515e-56
Identity = 113/136 (83.09%), Postives = 121/136 (88.97%), Query Frame = -2 
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG+DTIA+IITSIRNADM+RK  VRIASTNITEN+++ILLREGFIEN RK    +N K FLVLTLRHRRNRK PYR ILNLKRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:    1 MGRDTIAEIITSIRNADMDRKRVVRIASTNITENIIQILLREGFIENVRK--HRENNKYFLVLTLRHRRNRKRPYRNILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCYIW 134
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_GOSHI (30S ribosomal protein S8, chloroplastic OS=Gossypium hirsutum GN=rps8 PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.515e-56
Identity = 112/136 (82.35%), Postives = 121/136 (88.97%), Query Frame = -2 
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MGKDTIADIITSIRNADMNRKGT++I STNITEN+VKILLREGFI+N RK    +  K FLVLTLRHRRNRKGP+R ILNL+RISRPGLRIY NY++IPRIL GMGIVILSTSRGIMTDR ARLE IGGEILC IW
Sbjct:    1 MGKDTIADIITSIRNADMNRKGTIQIGSTNITENIVKILLREGFIDNVRK--HRERNKYFLVLTLRHRRNRKGPHRTILNLRRISRPGLRIYSNYQQIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCSIW 134
The following BLAST results are available for this feature:
BLAST of CX069676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR8_CITSI1.623e-71100.0030S ribosomal protein S8, chloroplastic OS=Citrus ... [more]
RR8_EUCGG1.861e-5986.0330S ribosomal protein S8, chloroplastic OS=Eucalyp... [more]
RR8_PANGI1.576e-5886.0330S ribosomal protein S8, chloroplastic OS=Panax g... [more]
RR8_VITVI1.021e-5785.2930S ribosomal protein S8, chloroplastic OS=Vitis v... [more]
RR8_GOSBA6.619e-5782.3530S ribosomal protein S8, chloroplastic OS=Gossypi... [more]
RR8_CUCSA8.645e-5782.3530S ribosomal protein S8, chloroplastic OS=Cucumis... [more]
RR8_SOLTU1.926e-5683.8230S ribosomal protein S8, chloroplastic OS=Solanum... [more]
RR8_SOLLC1.926e-5683.8230S ribosomal protein S8, chloroplastic OS=Solanum... [more]
RR8_SOLBU2.515e-5683.0930S ribosomal protein S8, chloroplastic OS=Solanum... [more]
RR8_GOSHI2.515e-5682.3530S ribosomal protein S8, chloroplastic OS=Gossypi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12B02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12B02-D4-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069676 ID=CX069676; Name=CX069676; organism=Citrus sinensis; type=EST; length=877bp
AATCCTCCCTTTTTTTTTCTCACAACATAAAAGTAAGCTCCAAATACAAT
TCGGATAGCAGAATAATTACCATATATAACACAAAATTTCTCCACCGATT
CTTTCCAGTCGAGCCGCTCGGTCTGTCATTATACCCCGAGAAGTAGAGAG
AATTACAATCCCCATCCCATCTAAAATTCTAGGAATTCGTCGATAGTTAA
AATAGATTCGTAGACCGGGTCGACTGATTCGTTTTAAATTTAAAATGGGT
CTATACGGCCCTTTCCTATTCCTTCGATGTCGTAGGGTTAAAACCAAAAA
CTCTTTTTTGTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTCGATAAAAC
CCTCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAGTAGATGCT
ATTCGAACCGTTCCCTTTCTATTCATGTCAGCATTTCGTATAGAAGTTAT
TATGTCAGCAATAGTGTCCTTGCCCATGATAAACTGAAAATTTTGTTGCT
TCCAAATTTTGATATAATCAACATGTTCTTTTTTTTATGAAAATTATTAA
AAGTATATGCGTGAGACATACTCTACTAAATTTTGATTTATCTATTTTAT
TTTCATACTATCACTATATCGCGGTCCCCTCTTATAATACTTCAGGTGCT
AATGAAACTATTTTAGTAAAATTCAACTGTCTCAATTCCCGGGCGATCGC
ACCAAAAACTCGAGTTCCCTTTGGATTTCCTTCGTGATCAATGACAACTG
CAGCATTGTCATCGTACCGTATTATCATACCGTTATCACGTCTGAGTTCT
TTACAAGTACGTACAATTACAGCTCTGATCACTTCTGATCTTTCTAGAGG
CGTATTGGGTACTGCTTCCTTGATCAC
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