CX069542

Overview
NameCX069542
Unique NameCX069542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069542_ssr667 microsatellite CX069542_ssr667:667..678. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4729 contig Csv1_Contig4729:1..891. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069542 vs. ExPASy Swiss-Prot
Match: HEX6_RICCO (Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.198e-23
Identity = 53/59 (89.83%), Postives = 58/59 (98.31%), Query Frame = -3
Query:    2 GGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSV 178
            GGVTSM+PFL+KFFP+V+RKMKEDT+ISNYCKFDSQLLTSFTSSLYVAGLVASF ASSV
Sbjct:   44 GGVTSMDPFLKKFFPDVYRKMKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSV 102          
BLAST of CX069542 vs. ExPASy Swiss-Prot
Match: STC_RICCO (Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.428e-14
Identity = 37/59 (62.71%), Postives = 47/59 (79.66%), Query Frame = -3
Query:    2 GGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSV 178
            GGVTSM+ FL+KFFP V+RK K D   + YC++DSQ LT FTSSLY+A L+AS VAS++
Sbjct:   47 GGVTSMDSFLKKFFPSVYRKKKADESSNQYCQYDSQTLTMFTSSLYLAALIASLVASTI 105          
BLAST of CX069542 vs. ExPASy Swiss-Prot
Match: STP4_ARATH (Sugar transport protein 4 OS=Arabidopsis thaliana GN=STP4 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.865e-14
Identity = 40/59 (67.80%), Postives = 49/59 (83.05%), Query Frame = -3
Query:    2 GGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSV 178
            GGVTSMEPFLE+FFP V++KMK   + + YC+FDSQLLT FTSSLYVA LV+S  AS++
Sbjct:   45 GGVTSMEPFLEEFFPYVYKKMKSAHE-NEYCRFDSQLLTLFTSSLYVAALVSSLFASTI 102          
BLAST of CX069542 vs. ExPASy Swiss-Prot
Match: STP9_ARATH (Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.181e-14
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = -3
Query:    2 GGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSV 178
            GGVTSME FL KFFPEV ++M E  + + YCKFD+QLL  FTSSLY+A L +SFVAS+V
Sbjct:   47 GGVTSMEEFLSKFFPEVDKQMHEARRETAYCKFDNQLLQLFTSSLYLAALASSFVASAV 105          
BLAST of CX069542 vs. ExPASy Swiss-Prot
Match: STP5_ARATH (Sugar transport protein 5 OS=Arabidopsis thaliana GN=STP5 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.181e-14
Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = -3
Query:    8 GGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVAS 178
            GGVT+M+PFLEKFFP V +K  E  K + YC +DSQLLT+FTSSLYVAGLVAS VAS
Sbjct:   46 GGVTTMKPFLEKFFPSVLKKASE-AKTNVYCVYDSQLLTAFTSSLYVAGLVASLVAS 101          
BLAST of CX069542 vs. ExPASy Swiss-Prot
Match: STP1_ARATH (Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.579e-13
Identity = 35/59 (59.32%), Postives = 46/59 (77.97%), Query Frame = -3
Query:    2 GGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSV 178
            GGVTSM  FL++FFP V+RK +ED   + YC++DS  LT FTSSLY+A L++S VAS+V
Sbjct:   45 GGVTSMPSFLKRFFPSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTV 103          
BLAST of CX069542 vs. ExPASy Swiss-Prot
Match: STP10_ARATH (Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.517e-13
Identity = 37/59 (62.71%), Postives = 46/59 (77.97%), Query Frame = -3
Query:    2 GGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSV 178
            GGVTSME FL KFFP+V  +MK+    + YCKFD+Q+L  FTSSLY+A LVASF+AS +
Sbjct:   47 GGVTSMEEFLTKFFPQVESQMKKAKHDTAYCKFDNQMLQLFTSSLYLAALVASFMASVI 105          
BLAST of CX069542 vs. ExPASy Swiss-Prot
Match: STP3_ARATH (Sugar transport protein 3 OS=Arabidopsis thaliana GN=STP3 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.023e-12
Identity = 37/64 (57.81%), Postives = 51/64 (79.69%), Query Frame = -3
Query:    2 GGVTSMEPFLEKFFPEVHRKMKEDTKI-----SNYCKFDSQLLTSFTSSLYVAGLVASFVASSV 178
            GGV SM PFL++FFP+V++  +ED +      ++YC F+SQLLTSFTSSLYV+GL+A+ +ASSV
Sbjct:   46 GGVMSMGPFLKRFFPKVYKLQEEDRRRRGNSNNHYCLFNSQLLTSFTSSLYVSGLIATLLASSV 109          
BLAST of CX069542 vs. ExPASy Swiss-Prot
Match: STP13_ARATH (Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.634e-12
Identity = 38/58 (65.52%), Postives = 44/58 (75.86%), Query Frame = -3
Query:    8 GGVTSMEPFLEKFFPEVHRKMKEDT-KISNYCKFDSQLLTSFTSSLYVAGLVASFVAS 178
            GGVTSM  FLEKFFP V+RK+     K SNYCK+D+Q L  FTSSLY+AGL A+F AS
Sbjct:   45 GGVTSMPDFLEKFFPVVYRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFAS 102          
BLAST of CX069542 vs. ExPASy Swiss-Prot
Match: STP12_ARATH (Sugar transport protein 12 OS=Arabidopsis thaliana GN=STP12 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.478e-11
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = -3
Query:    2 GGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSV 178
            GGVT+M+ F +KFFP V+ K K+D   + YC+FDS  LT FTSSLY+A L +S VAS V
Sbjct:   45 GGVTTMDSFQQKFFPSVYEKQKKDHDSNQYCRFDSVSLTLFTSSLYLAALCSSLVASYV 103          
The following BLAST results are available for this feature:
BLAST of CX069542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
HEX6_RICCO2.198e-2389.83Hexose carrier protein HEX6 OS=Ricinus communis GN... [more]
STC_RICCO1.428e-1462.71Sugar carrier protein C OS=Ricinus communis GN=STC... [more]
STP4_ARATH1.865e-1467.80Sugar transport protein 4 OS=Arabidopsis thaliana ... [more]
STP9_ARATH3.181e-1466.10Sugar transport protein 9 OS=Arabidopsis thaliana ... [more]
STP5_ARATH3.181e-1471.93Sugar transport protein 5 OS=Arabidopsis thaliana ... [more]
STP1_ARATH1.579e-1359.32Sugar transport protein 1 OS=Arabidopsis thaliana ... [more]
STP10_ARATH3.517e-1362.71Sugar transport protein 10 OS=Arabidopsis thaliana... [more]
STP3_ARATH1.023e-1257.81Sugar transport protein 3 OS=Arabidopsis thaliana ... [more]
STP13_ARATH6.634e-1265.52Sugar transport protein 13 OS=Arabidopsis thaliana... [more]
STP12_ARATH1.478e-1157.63Sugar transport protein 12 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11B09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11B09-D17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069542 ID=CX069542; Name=CX069542; organism=Citrus sinensis; type=EST; length=891bp
TGACAGAGGAGGCGACGAAGGAAGCAACCAGGCCAGCAACATAGAGAGAG
GACGTGAAGGAGGTCAATAGTTGACTGTCAAATTTGCAGTAGTTGCTAAT
CTTTGTGTCTTCTTTCATCTTTCTGTGCACTTCCGGAAAGAATTTCTCCA
AAAATGGCTCCATTGATGTCACCCCACCTTCACATTTACTTTCACAAATC
AGTGCATCCTTTCGTCGAGTTAAATTTTTACAAACAACAAGGGCTCAAGT
GATAGAAACCGTTTATTTTACAGTTTTTTCAATTATCTAATCATTTTATG
TTTTGTTTTTCTCCTTGTCGGATACTTCTAACGTGCCAACAATTGGCAAT
TGTCTTAAGTCTTTTAGCAATTGTTGTCCACCATTTGTGCATGTCAATAT
CACGCCAAGCAATCCACGTGAAACCATTTAAATTTTCTTTCCTGTAAAAT
TGAATCTTTAATCATGTTGATTGAAATTAAAATTATCATCAACATGATCA
AATCTTCATCTTTATAAGTCGAATTTGGATGACTAATCAAGCAAACAGGT
ACTAAAAGCCACTCAATATTCTCTTTATTTTTTACTCATCTTTTAGATTA
AAATTACCATCATCGTTCCAATATACATTTAATGAATTGACATATTACAT
AATGCAAAGATAGTACCAAACAAACAAAATTAATGCAGAGAAGTGATATT
TTTATATAGCAAGAAGCACCAAGGAAAGAGATAGAATTAAAGAAATGAAC
AGACCTGAAATTCCAATATCGTAGCCAAAAATAACCCCTCCCATGCCAGC
CATCATACAAGACAAAATAACGAACGCAGTTATCTTCCCATTGTATATAT
TATTATCACCACCTTCACTTGCTATCGCCATCCCTGCTGCC
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