CX069537

Overview
NameCX069537
Unique NameCX069537
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069537_ssr390 microsatellite CX069537_ssr390:390..409. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4289 contig Csv1_Contig4289:1..886. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: ATG8C_ORYSJ (Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.558e-56
Identity = 107/117 (91.45%), Postives = 114/117 (97.44%), Query Frame = 1 
Query:  496 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 846
            MA+SSFKLEHPLERR AE+ RIREKYPDRIPVIVEKAE++D+PDIDKKKYLVPADL+VGQFVYVVRKRIKLSAEKAIF+FVKNTLPPT ALMSAIYEENKDEDGFLYMTYSGENTFG
Sbjct:    1 MARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: ATG8C_ORYSI (Autophagy-related protein 8C OS=Oryza sativa subsp. indica GN=ATG8C PE=3 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 2.558e-56
Identity = 107/117 (91.45%), Postives = 114/117 (97.44%), Query Frame = 1 
Query:  496 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 846
            MA+SSFKLEHPLERR AE+ RIREKYPDRIPVIVEKAE++D+PDIDKKKYLVPADL+VGQFVYVVRKRIKLSAEKAIF+FVKNTLPPT ALMSAIYEENKDEDGFLYMTYSGENTFG
Sbjct:    1 MARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: ATG8A_ORYSJ (Autophagy-related protein 8A OS=Oryza sativa subsp. japonica GN=ATG8A PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.166e-55
Identity = 107/117 (91.45%), Postives = 113/117 (96.58%), Query Frame = 1 
Query:  496 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 846
            MA++SFKLEHPLERR AESARIREKY DRIPVIVEKA+KTDVP+IDKKKYLVPADL+VGQFVYVVRKRIKLS EKAIFVFVKNTLPPT +LMSAIYEENKDEDGFLYMTYSGENTFG
Sbjct:    1 MARTSFKLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: ATG8A_ORYSI (Autophagy-related protein 8A OS=Oryza sativa subsp. indica GN=ATG8A PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.166e-55
Identity = 107/117 (91.45%), Postives = 113/117 (96.58%), Query Frame = 1 
Query:  496 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 846
            MA++SFKLEHPLERR AESARIREKY DRIPVIVEKA+KTDVP+IDKKKYLVPADL+VGQFVYVVRKRIKLS EKAIFVFVKNTLPPT +LMSAIYEENKDEDGFLYMTYSGENTFG
Sbjct:    1 MARTSFKLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: ATG8C_ARATH (Autophagy-related protein 8c OS=Arabidopsis thaliana GN=ATG8C PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.301e-55
Identity = 105/117 (89.74%), Postives = 113/117 (96.58%), Query Frame = 1 
Query:  496 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 846
            MA SSFKLEHPLERR  ES+RIREKYPDRIPVIVE+AE++DVP+IDKKKYLVPADL+VGQFVYVVRKRIKLSAEKAIFVFVKNTLPPT A+MSAIY+ENKDEDGFLYMTYSGENTFG
Sbjct:    1 MANSSFKLEHPLERRQIESSRIREKYPDRIPVIVERAERSDVPNIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTAAMMSAIYDENKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: ATG8B_ORYSJ (Autophagy-related protein 8B OS=Oryza sativa subsp. japonica GN=ATG8B PE=3 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 6.967e-54
Identity = 104/117 (88.89%), Postives = 111/117 (94.87%), Query Frame = 1 
Query:  496 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 846
            MAKSSFKL+H LERR AE+ RIREKY DRIPVIVEKAE++D+PDIDKKKYLVPADL+VGQFVYVVRKRIKLS EKAIF+FVKNTLPPT ALMSAIYEENKDEDGFLYMTYSGENTFG
Sbjct:    1 MAKSSFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: ATG8B_ORYSI (Autophagy-related protein 8B OS=Oryza sativa subsp. indica GN=ATG8B PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 6.967e-54
Identity = 104/117 (88.89%), Postives = 111/117 (94.87%), Query Frame = 1 
Query:  496 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 846
            MAKSSFKL+H LERR AE+ RIREKY DRIPVIVEKAE++D+PDIDKKKYLVPADL+VGQFVYVVRKRIKLS EKAIF+FVKNTLPPT ALMSAIYEENKDEDGFLYMTYSGENTFG
Sbjct:    1 MAKSSFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: ATG8A_ARATH (Autophagy-related protein 8a OS=Arabidopsis thaliana GN=ATG8A PE=1 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 2.027e-53
Identity = 103/117 (88.03%), Postives = 112/117 (95.73%), Query Frame = 1 
Query:  496 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 846
            MAKSSFK+ +PLE R++ES+RIREKYPDRIPVIVEKA ++DVPDIDKKKYLVPADL+VGQFVYVVRKRIKL AEKAIFVFVKNTLPPT ALMSAIYEE+KDEDGFLYMTYSGENTFG
Sbjct:    1 MAKSSFKISNPLEARMSESSRIREKYPDRIPVIVEKAGQSDVPDIDKKKYLVPADLTVGQFVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: ATG8D_ARATH (Autophagy-related protein 8d OS=Arabidopsis thaliana GN=ATG8D PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.314e-52
Identity = 102/120 (85.00%), Postives = 112/120 (93.33%), Query Frame = 1 
Query:  496 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGWSF 855
            MA SSFK EHPLE+R AE+ARIREKYPDRIPVIVE+AEK+DVPDID+KKYLVPADL+VGQFVYVVRKRIKLS EKAIF+FVKN LPPT A+MSAIYEE+KDEDGFLYM+YSGENTFG  F
Sbjct:    1 MAISSFKHEHPLEKRQAEAARIREKYPDRIPVIVERAEKSDVPDIDRKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAIMSAIYEEHKDEDGFLYMSYSGENTFGIFF 120
[Close]
BLAST of CX069537 vs. ExPASy Swiss-Prot
Match: ATG8B_ARATH (Autophagy-related protein 8b OS=Arabidopsis thaliana GN=ATG8B PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.716e-52
Identity = 101/120 (84.17%), Postives = 111/120 (92.50%), Query Frame = 1 
Query:  496 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGWSF 855
            M K+SFKL +PLE R+AES RIR KYP+R+PVIVEKA ++DVPDIDKKKYLVPADL++GQFVYVVRKRIKL AEKAIFVFVKNTLPPT ALMSAIYEE+KDEDGFLYMTYSGENTFG SF
Sbjct:    1 MEKNSFKLSNPLEMRMAESTRIRAKYPERVPVIVEKAGQSDVPDIDKKKYLVPADLTIGQFVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFGGSF 120
The following BLAST results are available for this feature:
BLAST of CX069537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
ATG8C_ORYSJ2.558e-5691.45Autophagy-related protein 8C OS=Oryza sativa subsp... [more]
ATG8C_ORYSI2.558e-5691.45Autophagy-related protein 8C OS=Oryza sativa subsp... [more]
ATG8A_ORYSJ2.166e-5591.45Autophagy-related protein 8A OS=Oryza sativa subsp... [more]
ATG8A_ORYSI2.166e-5591.45Autophagy-related protein 8A OS=Oryza sativa subsp... [more]
ATG8C_ARATH6.301e-5589.74Autophagy-related protein 8c OS=Arabidopsis thalia... [more]
ATG8B_ORYSJ6.967e-5488.89Autophagy-related protein 8B OS=Oryza sativa subsp... [more]
ATG8B_ORYSI6.967e-5488.89Autophagy-related protein 8B OS=Oryza sativa subsp... [more]
ATG8A_ARATH2.027e-5388.03Autophagy-related protein 8a OS=Arabidopsis thalia... [more]
ATG8D_ARATH1.314e-5285.00Autophagy-related protein 8d OS=Arabidopsis thalia... [more]
ATG8B_ARATH1.716e-5284.17Autophagy-related protein 8b OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11B05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11B05-D9-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069537 ID=CX069537; Name=CX069537; organism=Citrus sinensis; type=EST; length=885bp
CTTTTTTTAACTAATTTCCACATTTCATTTCATAACAAAATATCCACCCG
TGTCTCCCATTAGTATCAAAAAATGCCATTCTATGGGCAAACCAAAAAAT
AAAGAGTGCATTCTGAGATTCACTAGAGAGCTCACCATTACATTTGTGTG
TAAACAATCATTAAACCTTCAACAACTCCTTCTCTTTCTGTTTGTAGATG
CTATCAATCTTCTTCATATACTCATCTGTTAGTTTCTGTAAATCACTTGA
CAAGTCCTTCACATTGTCTTCAGAGAGCTTCTTCTCCTTCTGAAGTTTTT
CATAAGCTTTTAACGCATCTCTTCTTATATTCCTAACTGCCACCTGCAAA
TGATTGATGGGGGCAGTGCAGCAAAGCCACAATCAACCGATCAATCAATC
AATCAATCAAATACCTTGAAACCCTAATAATTTCCTTCTCTTCCCGATCC
ACTTCTCGTGTCGTGTTGAAGAGTCATCGTAGCGTCAGTTTCGCCATGGC
CAAAAGTTCATTCAAGCTCGAGCATCCATTGGAGAGGAGGCTGGCAGAAT
CTGCTCGCATTAGAGAGAAGTATCCTGACAGGATTCCGGTGATTGTGGAG
AAGGCTGAGAAGACTGATGTTCCTGACATTGACAAGAAAAAATACCTTGT
CCCAGCGGATTTATCTGTGGGACAATTTGTTTATGTTGTCCGTAAAAGGA
TTAAGCTCAGTGCAGAAAAGGCCATATTTGTTTTTGTTAAGAATACTTTA
CCTCCAACCGGTGCCTTGATGTCTGCTATATATGAGGAAAACAAGGATGA
AGATGGTTTTCTTTACATGACTTACAGTGGAGAGAATACCTTCGGTTGGT
CATTTTAAGAGCGAAGGCAACAAGCCATGTATCAT
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