CX069526

Overview
NameCX069526
Unique NameCX069526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC4_MAIZE (Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 1.988e-61
Identity = 123/184 (66.85%), Postives = 131/184 (71.20%), Query Frame = -2
Query:  197 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 748
            MVKAVAVLG +EGVKGT+ F QEGDG                                PTTV+GS+SGLKPG HGFHVHALGDTTNGCMSTGPH+NPA KEHGAPED+NRHA           G A   V D+QIPL+GPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLGSSEGVKGTIFFTQEGDG--------------------------------PTTVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152          
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 7.556e-61
Identity = 121/184 (65.76%), Postives = 131/184 (71.20%), Query Frame = -2
Query:  197 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 748
            MVKAVAVL  +EGV GT+ F+QEGDG                                PTTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAP DDNRHA           GTA+FT+ D QIPL+G NS+IGRAVVVH DPDDLGKGGHELSKSTGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLSSSEGVSGTIFFSQEGDG--------------------------------PTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHGDPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152          
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_ANACO (Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=SOD1 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 9.869e-61
Identity = 122/184 (66.30%), Postives = 130/184 (70.65%), Query Frame = -2
Query:  197 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 748
            MVKAVAVLG +EGVKGT+ F QEGDG                                PTTV+GS+SGLKPG HGFHVHALGDTTNGCMSTGPHFNPAG EHGAPED+ RHA           GT    +VD+QIPLSG NSIIGRAVVVHADPDDLGKGGHELSK+TGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLGSSEGVKGTIYFTQEGDG--------------------------------PTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGNEHGAPEDETRHAGDLGNVTVGEDGTVNVNIVDSQIPLSGSNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152          
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC1_MESCR (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 9.869e-61
Identity = 118/184 (64.13%), Postives = 132/184 (71.74%), Query Frame = -2
Query:  197 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 748
            MVKAV VL  +EGV GTV F QEG G                                PTTV+G++SGL+PG HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPED+ RHA           GTATFT++D+QIPL+GPNSI+GRAVVVHADPDDLG+GGHELSK+TGNAGGRVACG+IGLQG
Sbjct:    1 MVKAVVVLSSSEGVSGTVQFTQEGSG--------------------------------PTTVTGNVSGLRPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDETRHAGDLGNITVGDDGTATFTIIDSQIPLTGPNSIVGRAVVVHADPDDLGRGGHELSKATGNAGGRVACGVIGLQG 152          
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC5_MAIZE (Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SODCC.2 PE=2 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 1.683e-60
Identity = 121/184 (65.76%), Postives = 130/184 (70.65%), Query Frame = -2
Query:  197 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 748
            MVKAVAVLG ++GVKGT+ F QEGDG                                PT V+GS+SGLKPG HGFHVHALGDTTNGCMSTGPH+NPA KEHGAPED+NRHA           G A   V D+QIPL+GPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLGSSDGVKGTIFFTQEGDG--------------------------------PTAVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152          
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_SPIOL (Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea GN=SODCC PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.871e-60
Identity = 120/184 (65.22%), Postives = 132/184 (71.74%), Query Frame = -2
Query:  197 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 748
            M KAV VL  +EGV GTV FAQEGDG                                PTTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPH+NP GKEHGAPEDD RHA           GTATFT++D+QIPLSGPNSI+GRAVVVHA+PDDLG+GGHELSK+TGNAGGRVACGIIGLQG
Sbjct:    1 MGKAVVVLSSSEGVSGTVYFAQEGDG--------------------------------PTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPNGKEHGAPEDDVRHAGDLGNITVGDDGTATFTIIDSQIPLSGPNSIVGRAVVVHAEPDDLGRGGHELSKTTGNAGGRVACGIIGLQG 152          
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_PAUKA (Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii GN=SODCC PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.091e-59
Identity = 118/184 (64.13%), Postives = 130/184 (70.65%), Query Frame = -2
Query:  197 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 748
            MVK VAVL  +EGV GT+ F QEGDG                                PTTV+G++SGLKPGPHGFHVHALGDTTNGC+STGPHFNPAGKEHGAP+D+ RHA           GTA FT+VD QIPL+GP+SIIGRAVVVHADPDDLGKGGHELSK+TGN GGRVACGI GLQG
Sbjct:    1 MVKGVAVLSSSEGVSGTIYFTQEGDG--------------------------------PTTVTGNVSGLKPGPHGFHVHALGDTTNGCLSTGPHFNPAGKEHGAPDDEVRHAGDLGNVTVGEDGTAAFTIVDKQIPLTGPHSIIGRAVVVHADPDDLGKGGHELSKTTGNTGGRVACGINGLQG 152          
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSJ (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. japonica GN=SODCC1 PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.091e-59
Identity = 120/184 (65.22%), Postives = 130/184 (70.65%), Query Frame = -2
Query:  197 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 748
            MVKAV VLG +E VKGT+ F QEGDG                                PTTV+GS+SGLKPG HGFH+HALGDTTNGCMSTGPH+NPAGKEHGAPED+ RHA           G A   VVD+QIPL+GPNSIIGRAVVVHADPDDLGKGGHELSK+TGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVVVLGSSEIVKGTIHFVQEGDG--------------------------------PTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152          
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSI (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. indica GN=SODCC1 PE=2 SV=2)

HSP 1 Score: 230.335 bits (586), Expect = 1.091e-59
Identity = 120/184 (65.22%), Postives = 130/184 (70.65%), Query Frame = -2
Query:  197 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 748
            MVKAV VLG +E VKGT+ F QEGDG                                PTTV+GS+SGLKPG HGFH+HALGDTTNGCMSTGPH+NPAGKEHGAPED+ RHA           G A   VVD+QIPL+GPNSIIGRAVVVHADPDDLGKGGHELSK+TGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVVVLGSSEIVKGTIHFVQEGDG--------------------------------PTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152          
BLAST of CX069526 vs. ExPASy Swiss-Prot
Match: SODC_ZANAE (Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethiopica GN=SODCC PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.431e-59
Identity = 119/183 (65.03%), Postives = 131/183 (71.58%), Query Frame = -2
Query:  200 MVKAVAVLGGTEGVKGTVSFAQEGDGILFSN*LVDSETSCS*IMSKVIXXXXXXXXXXPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 748
            MVKAVAVL G+EGV+GTV FAQEG+G                                PTT++GSLSGLKPG HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPED NRHA           GT  FTV D+QIPL+G NS++GRAVVVHAD DDLGKGGHELSK+TGNAGGR+ACG+IGLQ
Sbjct:    1 MVKAVAVLTGSEGVQGTVFFAQEGEG--------------------------------PTTITGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDGNRHAGDLGNVTVGEDGTVNFTVTDSQIPLTGLNSVVGRAVVVHADSDDLGKGGHELSKTTGNAGGRLACGVIGLQ 151          
The following BLAST results are available for this feature:
BLAST of CX069526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC4_MAIZE1.988e-6166.85Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SOD... [more]
SODC_IPOBA7.556e-6165.76Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN... [more]
SODC_ANACO9.869e-6166.30Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=... [more]
SODC1_MESCR9.869e-6164.13Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum... [more]
SODC5_MAIZE1.683e-6065.76Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SO... [more]
SODC_SPIOL2.871e-6065.22Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea ... [more]
SODC_PAUKA1.091e-5964.13Superoxide dismutase [Cu-Zn] OS=Paulownia kawakami... [more]
SODC1_ORYSJ1.091e-5965.22Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC1_ORYSI1.091e-5965.22Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC_ZANAE2.431e-5965.03Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11A08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11A08-B15-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069526 ID=CX069526; Name=CX069526; organism=Citrus sinensis; type=EST; length=878bp
TTTTTTTTTTTTTTTTTAAATGAAAATGTAAAGATGGAGATTATAAGAAA
ACCATCCAAGATACACAACAAAGTTATAGATTTCTCTTATTCAAGATCAT
AGTCTTGAAAAGTCACACTCAAGCATATATGGACTATAATGCACTCAAAA
CATCATATCAAATGAATTTATTATTGTCCGATGAGATAAGGCTTCACCCT
TGGAGGCCAATGATGCCGCAAGCTACTCTGCCACCAGCATTTCCAGTGCT
TTTGCTCAGCTCATGACCGCCCTTGCCAAGATCATCGGGATCTGCGTGGA
CTACAACAGCCCTTCCAATAATGGAATTTGGTCCAGAAAGTGGAATCTGA
TTGTCAACAACTGTAAAAGTAGCAGTACCATCATCACCAACATTGACATT
TCCTAAATCACCAGCATGACGATTATCATCCTCTGGAGCTCCATGTTCTT
TTCCAGCAGGGTTAAAGTGGGGTCCAGTAGACATGCAACCATTTGTTGTG
TCTCCAAGAGCATGAACATGGAATCCATGAGGACCAGGCTTGAGACCAGA
GAGGCTTCCTGATACAGTTGTTGGACCTGGAAGGGGGAAAAAAGGCCCCA
AAAAAATTACTTTAGACATGATTTAAGAACAACTAGTTTCAGAATCGACT
AACTAATTACTGAATAAAATACCATCTCCTTCCTGGGCAAAGGAAACAGT
TCCCTTGACACCCTCAGTTCCACCAAGAACTGCAACTGCTTTCACCATTG
TGCTGTGTGATCTGAGCAGCACAAAATATCACATTTAGTGAACCATCAGA
GTATAAAAATCACAAACTTCCAACTACTATAGAAACAACGCCAGCAGAAC
AAAAAACAAAATAAAAACCGTTGCCGGA
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