CX069525
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX069525 vs. ExPASy Swiss-Prot
Match: RPB7_SOYBN (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2 SV=1) HSP 1 Score: 345.125 bits (884), Expect = 2.757e-94 Identity = 165/176 (93.75%), Postives = 174/176 (98.86%), Query Frame = 2 Query: 44 MFFHIVLERNMQLHPRHFGRNLREHIISKLMKDVEGTCSGRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPTTI 571 MFFHIVLERNMQLHPR+FGRNLR++++SKLMKDVEGTCSGRHGFVVA+T +ENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVV+MVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP T+ Sbjct: 1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATV 176
BLAST of CX069525 vs. ExPASy Swiss-Prot
Match: RPB7_ARATH (DNA-directed RNA polymerase II subunit RPB7 OS=Arabidopsis thaliana GN=RPB19 PE=1 SV=1) HSP 1 Score: 327.02 bits (837), Expect = 7.771e-89 Identity = 156/173 (90.17%), Postives = 167/173 (96.53%), Query Frame = 2 Query: 44 MFFHIVLERNMQLHPRHFGRNLREHIISKLMKDVEGTCSGRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP 562 MFFHIVLERNMQLHPR FGRNL+E+++SKLMKDVEGTCSGRHGFVVAIT ++ IGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVV++VNKMGFFAEAGPVQIFVS HLIPDDMEFQ+GDMPNYTTSDGSVKIQK+ EVRLKIIGTRVDAT IFC+GTIKDDFLGVINDP Sbjct: 1 MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQAGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDP 173
BLAST of CX069525 vs. ExPASy Swiss-Prot
Match: RPB7_RAT (DNA-directed RNA polymerase II subunit RPB7 OS=Rattus norvegicus GN=Polr2g PE=2 SV=1) HSP 1 Score: 206.453 bits (524), Expect = 1.531e-52 Identity = 92/172 (53.49%), Postives = 131/172 (76.16%), Query Frame = 2 Query: 44 MFFHIVLERNMQLHPRHFGRNLREHIISKLMKDVEGTCSGRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 556 MF+HI LE + LHPR+FG NL + KL +VEGTC+G++GFV+A+T+++NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVV+ VNK+G F E GP+ F+S H IP +MEF + + P Y T D + IQ+D E+RLKI+GTRVD +IF IG++ DD+LG+++ Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172
BLAST of CX069525 vs. ExPASy Swiss-Prot
Match: RPB7_MOUSE (DNA-directed RNA polymerase II subunit RPB7 OS=Mus musculus GN=Polr2g PE=2 SV=1) HSP 1 Score: 206.453 bits (524), Expect = 1.531e-52 Identity = 92/172 (53.49%), Postives = 131/172 (76.16%), Query Frame = 2 Query: 44 MFFHIVLERNMQLHPRHFGRNLREHIISKLMKDVEGTCSGRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 556 MF+HI LE + LHPR+FG NL + KL +VEGTC+G++GFV+A+T+++NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVV+ VNK+G F E GP+ F+S H IP +MEF + + P Y T D + IQ+D E+RLKI+GTRVD +IF IG++ DD+LG+++ Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172
BLAST of CX069525 vs. ExPASy Swiss-Prot
Match: RPB7_HUMAN (DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens GN=POLR2G PE=1 SV=1) HSP 1 Score: 206.453 bits (524), Expect = 1.531e-52 Identity = 92/172 (53.49%), Postives = 131/172 (76.16%), Query Frame = 2 Query: 44 MFFHIVLERNMQLHPRHFGRNLREHIISKLMKDVEGTCSGRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 556 MF+HI LE + LHPR+FG NL + KL +VEGTC+G++GFV+A+T+++NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVV+ VNK+G F E GP+ F+S H IP +MEF + + P Y T D + IQ+D E+RLKI+GTRVD +IF IG++ DD+LG+++ Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172
BLAST of CX069525 vs. ExPASy Swiss-Prot
Match: RPB7_DANRE (DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio GN=polr2g PE=2 SV=1) HSP 1 Score: 206.453 bits (524), Expect = 1.531e-52 Identity = 93/172 (54.07%), Postives = 131/172 (76.16%), Query Frame = 2 Query: 44 MFFHIVLERNMQLHPRHFGRNLREHIISKLMKDVEGTCSGRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 556 MF+HI LE + LHPR+FG NL + KL +VEGTC+G++GFV+A+T+++NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVV+ VNK+G F E GP+ F+S H IP +MEF + + P Y T D V IQ+D E+RLKI+GTRVD +IF IG++ DD+LG+++ Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDVVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172
BLAST of CX069525 vs. ExPASy Swiss-Prot
Match: RPB7_BOVIN (DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus GN=POLR2G PE=2 SV=1) HSP 1 Score: 206.453 bits (524), Expect = 1.531e-52 Identity = 92/172 (53.49%), Postives = 131/172 (76.16%), Query Frame = 2 Query: 44 MFFHIVLERNMQLHPRHFGRNLREHIISKLMKDVEGTCSGRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 556 MF+HI LE + LHPR+FG NL + KL +VEGTC+G++GFV+A+T+++NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVV+ VNK+G F E GP+ F+S H IP +MEF + + P Y T D + IQ+D E+RLKI+GTRVD +IF IG++ DD+LG+++ Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172
BLAST of CX069525 vs. ExPASy Swiss-Prot
Match: RPB7_DICDI (DNA-directed RNA polymerase II subunit rpb7 OS=Dictyostelium discoideum GN=polr2g PE=3 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 6.431e-51 Identity = 93/171 (54.39%), Postives = 130/171 (76.02%), Query Frame = 2 Query: 44 MFFHIVLERNMQLHPRHFGRNLREHIISKLMKDVEGTCSGRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQS-GDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVI 553 MFFH+ LE+++ +HP+H G NL +L +VEGTC+GR+GF++ ITSV+ + KG + + +G+V F VKY+ ++F+PFKGE+L+A+V+ V +GFFAEAGP+ IFVS LIP DM F + +P + + DGS KI KD EVRL+I GTRVDATEIF IG+I++D+LGVI Sbjct: 1 MFFHLTLEKDLHMHPKHCGPNLFTIATQQLYSEVEGTCTGRYGFIITITSVDFLSKGKVLESSGYVVFNVKYKAIIFKPFKGEVLDAIVTKVTNLGFFAEAGPLSIFVSTQLIPSDMIFDAQSAVPCFVSEDGSSKISKDDEVRLQIKGTRVDATEIFAIGSIREDYLGVI 171
BLAST of CX069525 vs. ExPASy Swiss-Prot
Match: RPB7_SCHPO (DNA-directed RNA polymerase II subunit rpb7 OS=Schizosaccharomyces pombe GN=rpb7 PE=1 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 2.215e-43 Identity = 84/172 (48.84%), Postives = 126/172 (73.26%), Query Frame = 2 Query: 47 FFHIVLERNMQLHPRHFGRNLREHIISKLMKDVEGTCSGRHGFVVAI--TSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVI 553 FF L + LHP +FG +++++ +KL+ DVEGTCSG++G+++ + ++ +I KG + G GF F VKY+ V++RPF+GE+++A+V+ VNKMGFFA GP+ +FVS+HL+P DM+F + + PNY+ D I+K S VRLKI+GTR DATEIF I T+K+D+LGV+ Sbjct: 3 FFLKELSLTISLHPSYFGPRMQDYLKAKLLADVEGTCSGQYGYIICVLDSNTIDIDKGRVVPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMKFDPTANPPNYSGED--QVIEKGSNVRLKIVGTRTDATEIFAIATMKEDYLGVL 172
BLAST of CX069525 vs. ExPASy Swiss-Prot
Match: RPB7_YEAST (DNA-directed RNA polymerase II subunit RPB7 OS=Saccharomyces cerevisiae GN=RPB7 PE=1 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 9.655e-31 Identity = 66/173 (38.15%), Postives = 112/173 (64.74%), Query Frame = 2 Query: 44 MFFHIVLERNMQLHPRHFGRNLREHIISKLMKDVEGTCSGRHGFVVAITSVENIG--KGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSG-DMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVI 553 MFF L N+ LHP FG +++++ +KL+++VEG+C+G+ G+++ + +NI +G I G F VKY+ VVF+PFKGE+++ V ++ GF + GP+++FV+ HL+P D+ F +G + P+Y +S+ + I+ S +R+KI G + I IG+IK+D+LG I Sbjct: 1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIK--SRIRVKIEGCISQVSSIHAIGSIKEDYLGAI 171 The following BLAST results are available for this feature:
BLAST of CX069525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX069525 ID=CX069525; Name=CX069525; organism=Citrus sinensis; type=EST; length=824bpback to top |