CX069525

Overview
NameCX069525
Unique NameCX069525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3326 contig Csv1_Contig3326:7..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069525 vs. ExPASy Swiss-Prot
Match: RPB7_SOYBN (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 345.125 bits (884), Expect = 2.757e-94
Identity = 165/176 (93.75%), Postives = 174/176 (98.86%), Query Frame = 2
Query:   44 MFFHIVLERNMQLHPRHFGRNLREHIISKLMKDVEGTCSGRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPTTI 571
            MFFHIVLERNMQLHPR+FGRNLR++++SKLMKDVEGTCSGRHGFVVA+T +ENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVV+MVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP T+
Sbjct:    1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATV 176          
BLAST of CX069525 vs. ExPASy Swiss-Prot
Match: RPB7_ARATH (DNA-directed RNA polymerase II subunit RPB7 OS=Arabidopsis thaliana GN=RPB19 PE=1 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 7.771e-89
Identity = 156/173 (90.17%), Postives = 167/173 (96.53%), Query Frame = 2
Query:   44 MFFHIVLERNMQLHPRHFGRNLREHIISKLMKDVEGTCSGRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP 562
            MFFHIVLERNMQLHPR FGRNL+E+++SKLMKDVEGTCSGRHGFVVAIT ++ IGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVV++VNKMGFFAEAGPVQIFVS HLIPDDMEFQ+GDMPNYTTSDGSVKIQK+ EVRLKIIGTRVDAT IFC+GTIKDDFLGVINDP
Sbjct:    1 MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQAGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDP 173          
BLAST of CX069525 vs. ExPASy Swiss-Prot
Match: RPB7_RAT (DNA-directed RNA polymerase II subunit RPB7 OS=Rattus norvegicus GN=Polr2g PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.531e-52
Identity = 92/172 (53.49%), Postives = 131/172 (76.16%), Query Frame = 2
Query:   44 MFFHIVLERNMQLHPRHFGRNLREHIISKLMKDVEGTCSGRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 556
            MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T+++NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVV+ VNK+G F E GP+  F+S H IP +MEF  + + P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct:    1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172          
BLAST of CX069525 vs. ExPASy Swiss-Prot
Match: RPB7_MOUSE (DNA-directed RNA polymerase II subunit RPB7 OS=Mus musculus GN=Polr2g PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.531e-52
Identity = 92/172 (53.49%), Postives = 131/172 (76.16%), Query Frame = 2
Query:   44 MFFHIVLERNMQLHPRHFGRNLREHIISKLMKDVEGTCSGRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 556
            MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T+++NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVV+ VNK+G F E GP+  F+S H IP +MEF  + + P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct:    1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172          
BLAST of CX069525 vs. ExPASy Swiss-Prot
Match: RPB7_HUMAN (DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens GN=POLR2G PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.531e-52
Identity = 92/172 (53.49%), Postives = 131/172 (76.16%), Query Frame = 2
Query:   44 MFFHIVLERNMQLHPRHFGRNLREHIISKLMKDVEGTCSGRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 556
            MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T+++NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVV+ VNK+G F E GP+  F+S H IP +MEF  + + P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct:    1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172          
BLAST of CX069525 vs. ExPASy Swiss-Prot
Match: RPB7_DANRE (DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio GN=polr2g PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.531e-52
Identity = 93/172 (54.07%), Postives = 131/172 (76.16%), Query Frame = 2
Query:   44 MFFHIVLERNMQLHPRHFGRNLREHIISKLMKDVEGTCSGRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 556
            MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T+++NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVV+ VNK+G F E GP+  F+S H IP +MEF  + + P Y T D  V IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct:    1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDVVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172          
BLAST of CX069525 vs. ExPASy Swiss-Prot
Match: RPB7_BOVIN (DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus GN=POLR2G PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.531e-52
Identity = 92/172 (53.49%), Postives = 131/172 (76.16%), Query Frame = 2
Query:   44 MFFHIVLERNMQLHPRHFGRNLREHIISKLMKDVEGTCSGRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 556
            MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T+++NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVV+ VNK+G F E GP+  F+S H IP +MEF  + + P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct:    1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172          
BLAST of CX069525 vs. ExPASy Swiss-Prot
Match: RPB7_DICDI (DNA-directed RNA polymerase II subunit rpb7 OS=Dictyostelium discoideum GN=polr2g PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 6.431e-51
Identity = 93/171 (54.39%), Postives = 130/171 (76.02%), Query Frame = 2
Query:   44 MFFHIVLERNMQLHPRHFGRNLREHIISKLMKDVEGTCSGRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQS-GDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVI 553
            MFFH+ LE+++ +HP+H G NL      +L  +VEGTC+GR+GF++ ITSV+ + KG + + +G+V F VKY+ ++F+PFKGE+L+A+V+ V  +GFFAEAGP+ IFVS  LIP DM F +   +P + + DGS KI KD EVRL+I GTRVDATEIF IG+I++D+LGVI
Sbjct:    1 MFFHLTLEKDLHMHPKHCGPNLFTIATQQLYSEVEGTCTGRYGFIITITSVDFLSKGKVLESSGYVVFNVKYKAIIFKPFKGEVLDAIVTKVTNLGFFAEAGPLSIFVSTQLIPSDMIFDAQSAVPCFVSEDGSSKISKDDEVRLQIKGTRVDATEIFAIGSIREDYLGVI 171          
BLAST of CX069525 vs. ExPASy Swiss-Prot
Match: RPB7_SCHPO (DNA-directed RNA polymerase II subunit rpb7 OS=Schizosaccharomyces pombe GN=rpb7 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.215e-43
Identity = 84/172 (48.84%), Postives = 126/172 (73.26%), Query Frame = 2
Query:   47 FFHIVLERNMQLHPRHFGRNLREHIISKLMKDVEGTCSGRHGFVVAI--TSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVI 553
            FF   L   + LHP +FG  +++++ +KL+ DVEGTCSG++G+++ +  ++  +I KG +  G GF  F VKY+ V++RPF+GE+++A+V+ VNKMGFFA  GP+ +FVS+HL+P DM+F  + + PNY+  D    I+K S VRLKI+GTR DATEIF I T+K+D+LGV+
Sbjct:    3 FFLKELSLTISLHPSYFGPRMQDYLKAKLLADVEGTCSGQYGYIICVLDSNTIDIDKGRVVPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMKFDPTANPPNYSGED--QVIEKGSNVRLKIVGTRTDATEIFAIATMKEDYLGVL 172          
BLAST of CX069525 vs. ExPASy Swiss-Prot
Match: RPB7_YEAST (DNA-directed RNA polymerase II subunit RPB7 OS=Saccharomyces cerevisiae GN=RPB7 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.655e-31
Identity = 66/173 (38.15%), Postives = 112/173 (64.74%), Query Frame = 2
Query:   44 MFFHIVLERNMQLHPRHFGRNLREHIISKLMKDVEGTCSGRHGFVVAITSVENIG--KGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSG-DMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVI 553
            MFF   L  N+ LHP  FG  +++++ +KL+++VEG+C+G+ G+++ +   +NI   +G I    G   F VKY+ VVF+PFKGE+++  V   ++ GF  + GP+++FV+ HL+P D+ F +G + P+Y +S+  + I+  S +R+KI G     + I  IG+IK+D+LG I
Sbjct:    1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIK--SRIRVKIEGCISQVSSIHAIGSIKEDYLGAI 171          
The following BLAST results are available for this feature:
BLAST of CX069525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RPB7_SOYBN2.757e-9493.75DNA-directed RNA polymerase II subunit RPB7 OS=Gly... [more]
RPB7_ARATH7.771e-8990.17DNA-directed RNA polymerase II subunit RPB7 OS=Ara... [more]
RPB7_RAT1.531e-5253.49DNA-directed RNA polymerase II subunit RPB7 OS=Rat... [more]
RPB7_MOUSE1.531e-5253.49DNA-directed RNA polymerase II subunit RPB7 OS=Mus... [more]
RPB7_HUMAN1.531e-5253.49DNA-directed RNA polymerase II subunit RPB7 OS=Hom... [more]
RPB7_DANRE1.531e-5254.07DNA-directed RNA polymerase II subunit RPB7 OS=Dan... [more]
RPB7_BOVIN1.531e-5253.49DNA-directed RNA polymerase II subunit RPB7 OS=Bos... [more]
RPB7_DICDI6.431e-5154.39DNA-directed RNA polymerase II subunit rpb7 OS=Dic... [more]
RPB7_SCHPO2.215e-4348.84DNA-directed RNA polymerase II subunit rpb7 OS=Sch... [more]
RPB7_YEAST9.655e-3138.15DNA-directed RNA polymerase II subunit RPB7 OS=Sac... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_11A07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11A07-B13-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069525 ID=CX069525; Name=CX069525; organism=Citrus sinensis; type=EST; length=824bp
TTAAAATCATCAGACGGGAAGAGAGAGCAAAGGAAAAGAAAAGATGTTCT
TTCACATAGTGCTGGAGCGAAACATGCAGCTGCATCCTCGCCACTTTGGT
CGTAATCTTCGTGAACATATCATCTCCAAGCTCATGAAAGATGTTGAGGG
CACTTGCAGTGGACGGCATGGATTTGTGGTGGCGATAACGAGTGTGGAAA
ATATCGGGAAGGGCCTGATTCGGGATGGGACAGGGTTCGTGACTTTTCCG
GTGAAGTACCAGTGTGTTGTTTTTAGACCCTTTAAAGGGGAAATTTTGGA
AGCTGTTGTTTCCATGGTTAACAAGATGGGGTTTTTCGCTGAAGCTGGAC
CTGTTCAAATTTTTGTTTCAAATCATTTGATACCGGATGATATGGAGTTC
CAGTCAGGAGATATGCCAAATTACACTACCTCAGATGGATCGGTGAAGAT
TCAAAAGGATAGTGAGGTTCGGTTAAAGATAATTGGGACTCGAGTTGATG
CCACTGAAATTTTCTGCATCGGTACCATAAAGGATGATTTCTTGGGAGTG
ATCAATGATCCTACAACGATCTAGTGAGGGAATAGCTCCAAGATCAACTT
CACACATCTCGCTTGCTGTTCCTTGTTGTCTAGTTTTGTAGGCCATTGAT
CTGCCTTCGAAGTGTTCATTAACGTACTTATTGCTCCGCGAAGAAGATCT
TAGCTTTGTGGGTTCATTTAGTGTAACTATGTAGTTGTACAAGATTTACT
GAATGTAGTTGTGTTGAAGGTAGTGGCAATTATTTAATGAATTTTTGGTA
ATTGTTTCTTCTTTTTTTAAAAAA
back to top