CX069524
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX069524 vs. ExPASy Swiss-Prot
Match: RPB7_SOYBN (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2 SV=1) HSP 1 Score: 341.273 bits (874), Expect = 3.857e-93 Identity = 163/176 (92.61%), Postives = 172/176 (97.73%), Query Frame = -3 Query: 265 MFFHIVLERNMQLHPRHFGRNFREHIISKLMKDVEGTCSGRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGTIKDDFLGVINDPTTI 792 MFFHIVLERNMQLHPR+FGRN R++++SKLMKDVEGTCSGRHGFVVA+T +ENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVV+MVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDA EIFCIGTIKDDFLGVINDP T+ Sbjct: 1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATV 176
BLAST of CX069524 vs. ExPASy Swiss-Prot
Match: RPB7_ARATH (DNA-directed RNA polymerase II subunit RPB7 OS=Arabidopsis thaliana GN=RPB19 PE=1 SV=1) HSP 1 Score: 323.168 bits (827), Expect = 1.087e-87 Identity = 154/173 (89.02%), Postives = 165/173 (95.38%), Query Frame = -3 Query: 274 MFFHIVLERNMQLHPRHFGRNFREHIISKLMKDVEGTCSGRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGTIKDDFLGVINDP 792 MFFHIVLERNMQLHPR FGRN +E+++SKLMKDVEGTCSGRHGFVVAIT ++ IGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVV++VNKMGFFAEAGPVQIFVS HLIPDDMEFQ+GDMPNYTTSDGSVKIQK+ EVRLKIIGTRVDA IFC+GTIKDDFLGVINDP Sbjct: 1 MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQAGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDP 173
BLAST of CX069524 vs. ExPASy Swiss-Prot
Match: RPB7_RAT (DNA-directed RNA polymerase II subunit RPB7 OS=Rattus norvegicus GN=Polr2g PE=2 SV=1) HSP 1 Score: 204.142 bits (518), Expect = 7.358e-52 Identity = 91/172 (52.91%), Postives = 130/172 (75.58%), Query Frame = -3 Query: 280 MFFHIVLERNMQLHPRHFGRNFREHIISKLMKDVEGTCSGRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGTIKDDFLGVIN 792 MF+HI LE + LHPR+FG N + KL +VEGTC+G++GFV+A+T+++NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVV+ VNK+G F E GP+ F+S H IP +MEF + + P Y T D + IQ+D E+RLKI+GTRVD +IF IG++ DD+LG+++ Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172
BLAST of CX069524 vs. ExPASy Swiss-Prot
Match: RPB7_MOUSE (DNA-directed RNA polymerase II subunit RPB7 OS=Mus musculus GN=Polr2g PE=2 SV=1) HSP 1 Score: 204.142 bits (518), Expect = 7.358e-52 Identity = 91/172 (52.91%), Postives = 130/172 (75.58%), Query Frame = -3 Query: 280 MFFHIVLERNMQLHPRHFGRNFREHIISKLMKDVEGTCSGRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGTIKDDFLGVIN 792 MF+HI LE + LHPR+FG N + KL +VEGTC+G++GFV+A+T+++NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVV+ VNK+G F E GP+ F+S H IP +MEF + + P Y T D + IQ+D E+RLKI+GTRVD +IF IG++ DD+LG+++ Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172
BLAST of CX069524 vs. ExPASy Swiss-Prot
Match: RPB7_HUMAN (DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens GN=POLR2G PE=1 SV=1) HSP 1 Score: 204.142 bits (518), Expect = 7.358e-52 Identity = 91/172 (52.91%), Postives = 130/172 (75.58%), Query Frame = -3 Query: 280 MFFHIVLERNMQLHPRHFGRNFREHIISKLMKDVEGTCSGRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGTIKDDFLGVIN 792 MF+HI LE + LHPR+FG N + KL +VEGTC+G++GFV+A+T+++NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVV+ VNK+G F E GP+ F+S H IP +MEF + + P Y T D + IQ+D E+RLKI+GTRVD +IF IG++ DD+LG+++ Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172
BLAST of CX069524 vs. ExPASy Swiss-Prot
Match: RPB7_DANRE (DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio GN=polr2g PE=2 SV=1) HSP 1 Score: 204.142 bits (518), Expect = 7.358e-52 Identity = 92/172 (53.49%), Postives = 130/172 (75.58%), Query Frame = -3 Query: 280 MFFHIVLERNMQLHPRHFGRNFREHIISKLMKDVEGTCSGRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGTIKDDFLGVIN 792 MF+HI LE + LHPR+FG N + KL +VEGTC+G++GFV+A+T+++NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVV+ VNK+G F E GP+ F+S H IP +MEF + + P Y T D V IQ+D E+RLKI+GTRVD +IF IG++ DD+LG+++ Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDVVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172
BLAST of CX069524 vs. ExPASy Swiss-Prot
Match: RPB7_BOVIN (DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus GN=POLR2G PE=2 SV=1) HSP 1 Score: 204.142 bits (518), Expect = 7.358e-52 Identity = 91/172 (52.91%), Postives = 130/172 (75.58%), Query Frame = -3 Query: 280 MFFHIVLERNMQLHPRHFGRNFREHIISKLMKDVEGTCSGRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGTIKDDFLGVIN 792 MF+HI LE + LHPR+FG N + KL +VEGTC+G++GFV+A+T+++NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVV+ VNK+G F E GP+ F+S H IP +MEF + + P Y T D + IQ+D E+RLKI+GTRVD +IF IG++ DD+LG+++ Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172
BLAST of CX069524 vs. ExPASy Swiss-Prot
Match: RPB7_DICDI (DNA-directed RNA polymerase II subunit rpb7 OS=Dictyostelium discoideum GN=polr2g PE=3 SV=1) HSP 1 Score: 197.208 bits (500), Expect = 8.994e-50 Identity = 91/171 (53.22%), Postives = 128/171 (74.85%), Query Frame = -3 Query: 283 MFFHIVLERNMQLHPRHFGRNFREHIISKLMKDVEGTCSGRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQS-GDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGTIKDDFLGVI 792 MFFH+ LE+++ +HP+H G N +L +VEGTC+GR+GF++ ITSV+ + KG + + +G+V F VKY+ ++F+PFKGE+L+A+V+ V +GFFAEAGP+ IFVS LIP DM F + +P + + DGS KI KD EVRL+I GTRVDA EIF IG+I++D+LGVI Sbjct: 1 MFFHLTLEKDLHMHPKHCGPNLFTIATQQLYSEVEGTCTGRYGFIITITSVDFLSKGKVLESSGYVVFNVKYKAIIFKPFKGEVLDAIVTKVTNLGFFAEAGPLSIFVSTQLIPSDMIFDAQSAVPCFVSEDGSSKISKDDEVRLQIKGTRVDATEIFAIGSIREDYLGVI 171
BLAST of CX069524 vs. ExPASy Swiss-Prot
Match: RPB7_SCHPO (DNA-directed RNA polymerase II subunit rpb7 OS=Schizosaccharomyces pombe GN=rpb7 PE=1 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 1.817e-42 Identity = 83/172 (48.26%), Postives = 124/172 (72.09%), Query Frame = -3 Query: 283 FFHIVLERNMQLHPRHFGRNFREHIISKLMKDVEGTCSGRHGFVVAI--TSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGTIKDDFLGVI 789 FF L + LHP +FG ++++ +KL+ DVEGTCSG++G+++ + ++ +I KG + G GF F VKY+ V++RPF+GE+++A+V+ VNKMGFFA GP+ +FVS+HL+P DM+F + + PNY+ D I+K S VRLKI+GTR DA EIF I T+K+D+LGV+ Sbjct: 3 FFLKELSLTISLHPSYFGPRMQDYLKAKLLADVEGTCSGQYGYIICVLDSNTIDIDKGRVVPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMKFDPTANPPNYSGED--QVIEKGSNVRLKIVGTRTDATEIFAIATMKEDYLGVL 172
BLAST of CX069524 vs. ExPASy Swiss-Prot
Match: RPB7_YEAST (DNA-directed RNA polymerase II subunit RPB7 OS=Saccharomyces cerevisiae GN=RPB7 PE=1 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.721e-30 Identity = 66/173 (38.15%), Postives = 110/173 (63.58%), Query Frame = -3 Query: 283 MFFHIVLERNMQLHPRHFGRNFREHIISKLMKDVEGTCSGRHGFVVAITSVENIG--KGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSG-DMPNYTTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGTIKDDFLGVI 792 MFF L N+ LHP FG ++++ +KL+++VEG+C+G+ G+++ + +NI +G I G F VKY+ VVF+PFKGE+++ V ++ GF + GP+++FV+ HL+P D+ F +G + P+Y +S+ + I+ S +R+KI G I IG+IK+D+LG I Sbjct: 1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIK--SRIRVKIEGCISQVSSIHAIGSIKEDYLGAI 171 The following BLAST results are available for this feature:
BLAST of CX069524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX069524 ID=CX069524; Name=CX069524; organism=Citrus sinensis; type=EST; length=809bpback to top |