CX069524

Overview
NameCX069524
Unique NameCX069524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3326 contig Csv1_Contig3326:33..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069524 vs. ExPASy Swiss-Prot
Match: RPB7_SOYBN (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 341.273 bits (874), Expect = 3.857e-93
Identity = 163/176 (92.61%), Postives = 172/176 (97.73%), Query Frame = -3
Query:  265 MFFHIVLERNMQLHPRHFGRNFREHIISKLMKDVEGTCSGRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGTIKDDFLGVINDPTTI 792
            MFFHIVLERNMQLHPR+FGRN R++++SKLMKDVEGTCSGRHGFVVA+T +ENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVV+MVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDA EIFCIGTIKDDFLGVINDP T+
Sbjct:    1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATV 176          
BLAST of CX069524 vs. ExPASy Swiss-Prot
Match: RPB7_ARATH (DNA-directed RNA polymerase II subunit RPB7 OS=Arabidopsis thaliana GN=RPB19 PE=1 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 1.087e-87
Identity = 154/173 (89.02%), Postives = 165/173 (95.38%), Query Frame = -3
Query:  274 MFFHIVLERNMQLHPRHFGRNFREHIISKLMKDVEGTCSGRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGTIKDDFLGVINDP 792
            MFFHIVLERNMQLHPR FGRN +E+++SKLMKDVEGTCSGRHGFVVAIT ++ IGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVV++VNKMGFFAEAGPVQIFVS HLIPDDMEFQ+GDMPNYTTSDGSVKIQK+ EVRLKIIGTRVDA  IFC+GTIKDDFLGVINDP
Sbjct:    1 MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQAGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDP 173          
BLAST of CX069524 vs. ExPASy Swiss-Prot
Match: RPB7_RAT (DNA-directed RNA polymerase II subunit RPB7 OS=Rattus norvegicus GN=Polr2g PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.358e-52
Identity = 91/172 (52.91%), Postives = 130/172 (75.58%), Query Frame = -3
Query:  280 MFFHIVLERNMQLHPRHFGRNFREHIISKLMKDVEGTCSGRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGTIKDDFLGVIN 792
            MF+HI LE  + LHPR+FG N    +  KL  +VEGTC+G++GFV+A+T+++NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVV+ VNK+G F E GP+  F+S H IP +MEF  + + P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct:    1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172          
BLAST of CX069524 vs. ExPASy Swiss-Prot
Match: RPB7_MOUSE (DNA-directed RNA polymerase II subunit RPB7 OS=Mus musculus GN=Polr2g PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.358e-52
Identity = 91/172 (52.91%), Postives = 130/172 (75.58%), Query Frame = -3
Query:  280 MFFHIVLERNMQLHPRHFGRNFREHIISKLMKDVEGTCSGRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGTIKDDFLGVIN 792
            MF+HI LE  + LHPR+FG N    +  KL  +VEGTC+G++GFV+A+T+++NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVV+ VNK+G F E GP+  F+S H IP +MEF  + + P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct:    1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172          
BLAST of CX069524 vs. ExPASy Swiss-Prot
Match: RPB7_HUMAN (DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens GN=POLR2G PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.358e-52
Identity = 91/172 (52.91%), Postives = 130/172 (75.58%), Query Frame = -3
Query:  280 MFFHIVLERNMQLHPRHFGRNFREHIISKLMKDVEGTCSGRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGTIKDDFLGVIN 792
            MF+HI LE  + LHPR+FG N    +  KL  +VEGTC+G++GFV+A+T+++NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVV+ VNK+G F E GP+  F+S H IP +MEF  + + P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct:    1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172          
BLAST of CX069524 vs. ExPASy Swiss-Prot
Match: RPB7_DANRE (DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio GN=polr2g PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.358e-52
Identity = 92/172 (53.49%), Postives = 130/172 (75.58%), Query Frame = -3
Query:  280 MFFHIVLERNMQLHPRHFGRNFREHIISKLMKDVEGTCSGRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGTIKDDFLGVIN 792
            MF+HI LE  + LHPR+FG N    +  KL  +VEGTC+G++GFV+A+T+++NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVV+ VNK+G F E GP+  F+S H IP +MEF  + + P Y T D  V IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct:    1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDVVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172          
BLAST of CX069524 vs. ExPASy Swiss-Prot
Match: RPB7_BOVIN (DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus GN=POLR2G PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.358e-52
Identity = 91/172 (52.91%), Postives = 130/172 (75.58%), Query Frame = -3
Query:  280 MFFHIVLERNMQLHPRHFGRNFREHIISKLMKDVEGTCSGRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGTIKDDFLGVIN 792
            MF+HI LE  + LHPR+FG N    +  KL  +VEGTC+G++GFV+A+T+++NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVV+ VNK+G F E GP+  F+S H IP +MEF  + + P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct:    1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172          
BLAST of CX069524 vs. ExPASy Swiss-Prot
Match: RPB7_DICDI (DNA-directed RNA polymerase II subunit rpb7 OS=Dictyostelium discoideum GN=polr2g PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 8.994e-50
Identity = 91/171 (53.22%), Postives = 128/171 (74.85%), Query Frame = -3
Query:  283 MFFHIVLERNMQLHPRHFGRNFREHIISKLMKDVEGTCSGRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQS-GDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGTIKDDFLGVI 792
            MFFH+ LE+++ +HP+H G N       +L  +VEGTC+GR+GF++ ITSV+ + KG + + +G+V F VKY+ ++F+PFKGE+L+A+V+ V  +GFFAEAGP+ IFVS  LIP DM F +   +P + + DGS KI KD EVRL+I GTRVDA EIF IG+I++D+LGVI
Sbjct:    1 MFFHLTLEKDLHMHPKHCGPNLFTIATQQLYSEVEGTCTGRYGFIITITSVDFLSKGKVLESSGYVVFNVKYKAIIFKPFKGEVLDAIVTKVTNLGFFAEAGPLSIFVSTQLIPSDMIFDAQSAVPCFVSEDGSSKISKDDEVRLQIKGTRVDATEIFAIGSIREDYLGVI 171          
BLAST of CX069524 vs. ExPASy Swiss-Prot
Match: RPB7_SCHPO (DNA-directed RNA polymerase II subunit rpb7 OS=Schizosaccharomyces pombe GN=rpb7 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.817e-42
Identity = 83/172 (48.26%), Postives = 124/172 (72.09%), Query Frame = -3
Query:  283 FFHIVLERNMQLHPRHFGRNFREHIISKLMKDVEGTCSGRHGFVVAI--TSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGTIKDDFLGVI 789
            FF   L   + LHP +FG   ++++ +KL+ DVEGTCSG++G+++ +  ++  +I KG +  G GF  F VKY+ V++RPF+GE+++A+V+ VNKMGFFA  GP+ +FVS+HL+P DM+F  + + PNY+  D    I+K S VRLKI+GTR DA EIF I T+K+D+LGV+
Sbjct:    3 FFLKELSLTISLHPSYFGPRMQDYLKAKLLADVEGTCSGQYGYIICVLDSNTIDIDKGRVVPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMKFDPTANPPNYSGED--QVIEKGSNVRLKIVGTRTDATEIFAIATMKEDYLGVL 172          
BLAST of CX069524 vs. ExPASy Swiss-Prot
Match: RPB7_YEAST (DNA-directed RNA polymerase II subunit RPB7 OS=Saccharomyces cerevisiae GN=RPB7 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.721e-30
Identity = 66/173 (38.15%), Postives = 110/173 (63.58%), Query Frame = -3
Query:  283 MFFHIVLERNMQLHPRHFGRNFREHIISKLMKDVEGTCSGRHGFVVAITSVENIG--KGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSG-DMPNYTTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGTIKDDFLGVI 792
            MFF   L  N+ LHP  FG   ++++ +KL+++VEG+C+G+ G+++ +   +NI   +G I    G   F VKY+ VVF+PFKGE+++  V   ++ GF  + GP+++FV+ HL+P D+ F +G + P+Y +S+  + I+  S +R+KI G       I  IG+IK+D+LG I
Sbjct:    1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIK--SRIRVKIEGCISQVSSIHAIGSIKEDYLGAI 171          
The following BLAST results are available for this feature:
BLAST of CX069524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RPB7_SOYBN3.857e-9392.61DNA-directed RNA polymerase II subunit RPB7 OS=Gly... [more]
RPB7_ARATH1.087e-8789.02DNA-directed RNA polymerase II subunit RPB7 OS=Ara... [more]
RPB7_RAT7.358e-5252.91DNA-directed RNA polymerase II subunit RPB7 OS=Rat... [more]
RPB7_MOUSE7.358e-5252.91DNA-directed RNA polymerase II subunit RPB7 OS=Mus... [more]
RPB7_HUMAN7.358e-5252.91DNA-directed RNA polymerase II subunit RPB7 OS=Hom... [more]
RPB7_DANRE7.358e-5253.49DNA-directed RNA polymerase II subunit RPB7 OS=Dan... [more]
RPB7_BOVIN7.358e-5252.91DNA-directed RNA polymerase II subunit RPB7 OS=Bos... [more]
RPB7_DICDI8.994e-5053.22DNA-directed RNA polymerase II subunit rpb7 OS=Dic... [more]
RPB7_SCHPO1.817e-4248.26DNA-directed RNA polymerase II subunit rpb7 OS=Sch... [more]
RPB7_YEAST2.721e-3038.15DNA-directed RNA polymerase II subunit RPB7 OS=Sac... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_11A07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11A07-B13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069524 ID=CX069524; Name=CX069524; organism=Citrus sinensis; type=EST; length=809bp
TTTTTTTTTTTTTTTTTAAAAAAAAAAAAAACAATTACCAAAAATTCATT
AAATAATTGCCACTACCTTCAACACAACTACATTCAGTAAATCTTGTACA
ACTACATAGTTACACTAAATGAACCCACAAAGCTAAAATCTTCTTCGCGG
AACAATAAGTACGTTAATGAACACTTCAAAGGCAAATCAATGGCCTACAA
AACTAAACAACAAGGAACAGCAAGCGAGATGTGTGAAGTTGATCTTGGAG
CTATTCCCTCACTAAATCGTTGTAGGATCATTGATCACTCCCAAAAAATC
ATCCTTTATGGTACCGATGCAAAAAATTTCAGGGGCATCAACTCGAGTCC
CAATTATCTTTAACCGAACCTCACTATCCTTTTGAATCTTCACCGATCCA
TCTGAGGTAGTGTAATTTGGCATATCTCCTGACTGGAACTCCATATCATC
CGGTATCAAATGATTTGAAACAAAAATTTGAACAGGTCCAGCTTCAGCGA
AAAACCCCATCTTGTTAACCATGGAAACAACAGCTTCCAAAATTTCCCCT
TTAAAGGGTCTAAAAACAACACACTGGTACTTCACCGGAAAAGTCACGAA
CCCTGTCCCATCCCGAATCAGGCCCTTCCCGATATTTTCCACACTCGTTA
TCGCCACCACAAATCCATGCCGTCCACTGCAAGTGCCCTCAACATCTTTC
ATGAGCTTGGAGATGATATGTTCACGAAAATTACGACCAAAGTGGCGAGG
ATGCAGCTGCATGTTTCGCTCCAGCACTATGTGAAAGAACATCTTTTCTT
TTCCTTTGC
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