CX069501

Overview
NameCX069501
Unique NameCX069501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069501_ssr48 microsatellite CX069501_ssr48:48..59. BLAST: Citrus ESTs to TAIR9
Csv1_Contig6370 contig Csv1_Contig6370:119..990. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_CITSI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Citrus sinensis GN=ndhG PE=3 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 3.454e-74
Identity = 142/159 (89.31%), Postives = 142/159 (89.31%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHDF                 LFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFILVFLGSGLILGGLGVVLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 159
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_GOSHI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Gossypium hirsutum GN=ndhG PE=3 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.190e-66
Identity = 130/159 (81.76%), Postives = 136/159 (85.53%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHDF                 L TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGA+NVLI+FAVMFMNGS+Y KDF  NLWTIG+GLTSLVCTSI  SLITTILDTSWYGIIWTTR+NQIIEQDLISNSQQIGIHL+TDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGLILGGLGVVLLTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLILFAVMFMNGSEYYKDF--NLWTIGNGLTSLVCTSILVSLITTILDTSWYGIIWTTRSNQIIEQDLISNSQQIGIHLATDFFLPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_VITVI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Vitis vinifera GN=ndhG PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.651e-66
Identity = 129/159 (81.13%), Postives = 135/159 (84.91%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHDF                 L TNPIYSAFSLGLV VCISLFYI SNSHFVAAAQLLIYVGA+NVLIIFAVMFMNGS+Y KDF  NLWT+GDG+TS+VCTSIF SLITTILDTSWYGIIWTTR+NQIIEQDLISNSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGLILGGLGVVLLTNPIYSAFSLGLVFVCISLFYIPSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDF--NLWTVGDGVTSVVCTSIFASLITTILDTSWYGIIWTTRSNQIIEQDLISNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_EUCGG (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=ndhG PE=3 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 1.007e-65
Identity = 126/159 (79.25%), Postives = 135/159 (84.91%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHDF                 L TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGA+N+LI+FAVMFMNGS+Y KD  LNLWT+GDG+TSLVCTSI  SL+TTILDTSWYGIIWTT++NQIIEQDLI NSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGLILGSLGVVLLTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINILILFAVMFMNGSEYYKD--LNLWTVGDGITSLVCTSILVSLMTTILDTSWYGIIWTTKSNQIIEQDLIGNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_CARPA (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Carica papaya GN=ndhG PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 8.527e-65
Identity = 126/159 (79.25%), Postives = 133/159 (83.65%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDL GPIHDF                 LF NPIYSAFSLG VL CISLFYILSNSHFVAAAQLLIYVGA+NVLIIFAVMFMNGS+Y +DF  NLWTIGDG+TSLVCTSIF SLITTILDTSWYG+IWTTR NQI+EQDLIS+SQQIGIHLSTDFFLPFE
Sbjct:    1 MDLLGPIHDFLLVFLGSGLILGGLGVVLFPNPIYSAFSLGFVLACISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYRDF--NLWTIGDGITSLVCTSIFLSLITTILDTSWYGVIWTTRLNQILEQDLISSSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_PANGI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Panax ginseng GN=ndhG PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.114e-64
Identity = 126/159 (79.25%), Postives = 134/159 (84.28%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHDF                 L  NPIYSAFSLGLVLVC SLFYILSNSHFVAAAQLLIYVGA+NVLI+FAVMFMNGS+Y KDF  +LWTIGDG+TS+VCTSIF SLITTI DTSWYGIIWTT++NQIIEQDLISNSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGLILGGLGVVLLPNPIYSAFSLGLVLVCTSLFYILSNSHFVAAAQLLIYVGAINVLILFAVMFMNGSEYYKDF--HLWTIGDGVTSMVCTSIFVSLITTIPDTSWYGIIWTTKSNQIIEQDLISNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_OENPA (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Oenothera parviflora GN=ndhG PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.114e-64
Identity = 125/159 (78.62%), Postives = 135/159 (84.91%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHDF                 L TNPI+SAFSLGLVLVCISLF+ LSNS+FVAAAQLLIYVGA+NVLI+FAVMFMNGS+YSKD  L LWT+GDG+TSLVCTSIF SLITTILDTSWYGIIWTT++NQIIEQDLI NSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGLIVGGLGVVLLTNPIFSAFSLGLVLVCISLFFSLSNSYFVAAAQLLIYVGAINVLILFAVMFMNGSEYSKD--LTLWTVGDGITSLVCTSIFISLITTILDTSWYGIIWTTKSNQIIEQDLIGNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_OENGL (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Oenothera glazioviana GN=ndhG PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.114e-64
Identity = 125/159 (78.62%), Postives = 135/159 (84.91%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHDF                 L TNPI+SAFSLGLVLVCISLF+ LSNS+FVAAAQLLIYVGA+NVLI+FAVMFMNGS+YSKD  L LWT+GDG+TSLVCTSIF SLITTILDTSWYGIIWTT++NQIIEQDLI NSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGLIVGGLGVVLLTNPIFSAFSLGLVLVCISLFFSLSNSYFVAAAQLLIYVGAINVLILFAVMFMNGSEYSKD--LTLWTVGDGITSLVCTSIFISLITTILDTSWYGIIWTTKSNQIIEQDLIGNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_OENEH (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Oenothera elata subsp. hookeri GN=ndhG PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.114e-64
Identity = 125/159 (78.62%), Postives = 135/159 (84.91%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHDF                 L TNPI+SAFSLGLVLVCISLF+ LSNS+FVAAAQLLIYVGA+NVLI+FAVMFMNGS+YSKD  L LWT+GDG+TSLVCTSIF SLITTILDTSWYGIIWTT++NQIIEQDLI NSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGLIVGGLGVVLLTNPIFSAFSLGLVLVCISLFFSLSNSYFVAAAQLLIYVGAINVLILFAVMFMNGSEYSKD--LTLWTVGDGITSLVCTSIFISLITTILDTSWYGIIWTTKSNQIIEQDLIGNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069501 vs. ExPASy Swiss-Prot
Match: NU6C_OENBI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Oenothera biennis GN=ndhG PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.114e-64
Identity = 125/159 (78.62%), Postives = 135/159 (84.91%), Query Frame = -3 
Query:  343 MDLPGPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHDF                 L TNPI+SAFSLGLVLVCISLF+ LSNS+FVAAAQLLIYVGA+NVLI+FAVMFMNGS+YSKD  L LWT+GDG+TSLVCTSIF SLITTILDTSWYGIIWTT++NQIIEQDLI NSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGLIVGGLGVVLLTNPIFSAFSLGLVLVCISLFFSLSNSYFVAAAQLLIYVGAINVLILFAVMFMNGSEYSKD--LTLWTVGDGITSLVCTSIFISLITTILDTSWYGIIWTTKSNQIIEQDLIGNSQQIGIHLSTDFFLPFE 157
The following BLAST results are available for this feature:
BLAST of CX069501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
NU6C_CITSI3.454e-7489.31NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_GOSHI1.190e-6681.76NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_VITVI2.651e-6681.13NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_EUCGG1.007e-6579.25NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_CARPA8.527e-6579.25NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_PANGI1.114e-6479.25NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_OENPA1.114e-6478.62NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_OENGL1.114e-6478.62NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_OENEH1.114e-6478.62NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_OENBI1.114e-6478.62NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10H04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10H04-O8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069501 ID=CX069501; Name=CX069501; organism=Citrus sinensis; type=EST; length=872bp
CATCATTAACCAACTCCGTACCAATTTCGATTCATTTCAATCTGAACAAT
AATAATAATGCAAGTGATTTGGTTGCTTAGAATATACCAGGTACGGAACA
AAAGAATCCATTTGGTAATAGATCGAATAAAAAAAATTCTATTTTGATTT
TCTATTGATCTGTGAATAGTATTCAACTAGACTTTACAAGAATTTAAGGG
AAATGAATGTGATAACACATAATGAATGTGATAACACATAAAAAGTCGAA
TTGGGATTGCTGTTCCTAGTTATAAAGATTTGTTATTGACGCGCCACGGC
AATTGCACCTATTAAAGCAACTAAAAGAATTATTGAAACGAGTTCAAATG
GAAGAAAAAAGTCTGTTGATAAATGAATTCCAATTTGTTGACTATTACTT
ATCAAATCTTGTTCAATAATCTGGTTGGCTCGTGTAGTCCAAATAATCCC
GTACCACGATGTATCGAGAATAGTAGTGATTAGCGAAAAAAAAATACTTG
TACAAACCAGAGAAGTAAGACCATCGCCAATAGTCCAAAGATTCAACTGA
AAATCTTTGGAATAGTCTGAGCCGTTCATGAACATTACAGCAAATATGAT
TAAAACATTTACAGCTCCCACGTAAATAAGGAGTTGCGCGGCAGCTACAA
AATGGGAATTTGATAGAATATAGAATAATGATATACAAACAAGAACCAAT
CCCAAGGAAAAGGCAGAATAAATTGGGTTGGTAAATAATACCACTCCCAG
ACCTCCTAATATAAGACCCGATCCCAGAANAACTAAAATAAAATCGTGTA
TTGGTCCAGGCAAATCCATTATATTAAAATAGGAGATAAATAAATCGAAA
TCTTTTTCATGACCTTATTGAG
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