CX069475

Overview
NameCX069475
Unique NameCX069475
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3649 contig Csv1_Contig3649:266..961. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069475 vs. ExPASy Swiss-Prot
Match: APX4_SOLLC (Putative L-ascorbate peroxidase, chloroplastic OS=Solanum lycopersicum GN=CLEB3J9 PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.631e-71
Identity = 104/127 (81.89%), Postives = 119/127 (93.70%), Query Frame = -2
Query:  183 WGLFEKQFGRTDAQEPDPEGRVPQWEKATVQEMKDKFSAIGLGPRQLAVMSAFLGPDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQINYEAYTYPAQKIELSKLKL 563
            WG F++ FGR+DAQEPDPEGRVPQW+KA+VQEMKDKF A+GLGPRQLAVMS+FLGPDQAATEALLA+D +V PW+QKYQRSRETVS+TDYEVDLITT TKLSSLGQ INYEAYTYP +KI+++KLKL
Sbjct:  219 WGQFDRIFGRSDAQEPDPEGRVPQWDKASVQEMKDKFKAVGLGPRQLAVMSSFLGPDQAATEALLASDPEVLPWIQKYQRSRETVSRTDYEVDLITTVTKLSSLGQVINYEAYTYPPRKIDVTKLKL 345          

HSP 2 Score: 70.8626 bits (172), Expect = 1.631e-71
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = -1
Query:  565 FADFIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYGSN 690
            +AD IQ+AAQSAVK+TF+ASAI KCGGN EKG LLY+AYGSN
Sbjct:  175 YADLIQFAAQSAVKSTFIASAISKCGGNVEKGTLLYSAYGSN 216          
BLAST of CX069475 vs. ExPASy Swiss-Prot
Match: APX4_ARATH (Probable L-ascorbate peroxidase 4, chloroplastic OS=Arabidopsis thaliana GN=APX4 PE=1 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 5.219e-58
Identity = 112/145 (77.24%), Postives = 121/145 (83.45%), Query Frame = -2
Query:  183 GMKRKG--AYCTLHMAQMWGLFEKQFGRTDAQEPDPEGRVPQWEKATVQEMKDKFSAIGLGPRQLAVMSAFLGPDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQINYEAYTYPAQKIELSKLKL 611
            G + KG   Y     A  WGLF++ FGR+DA E DPEGRVPQW KATVQEMKDKF A+GLGPRQLAVMSAFLGPDQAATE LLATD  V+PWVQKYQRSRETVSQTDYEVDLIT FTKLS LGQQIN+EAYTYP ++I LSKLKL
Sbjct:  205 GNEEKGNLLYTAYGSAGQWGLFDRNFGRSDATEADPEGRVPQWGKATVQEMKDKFIAVGLGPRQLAVMSAFLGPDQAATEQLLATDPQVAPWVQKYQRSRETVSQTDYEVDLITAFTKLSCLGQQINFEAYTYPVERINLSKLKL 349          

HSP 2 Score: 70.8626 bits (172), Expect = 7.448e-12
Identity = 34/41 (82.93%), Postives = 36/41 (87.80%), Query Frame = -1
Query:  568 FADFIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYGS 690
            +AD IQ A QSAVK T+LASAIRKCGGNEEKG LLYTAYGS
Sbjct:  179 YADIIQLAGQSAVKFTYLASAIRKCGGNEEKGNLLYTAYGS 219          
The following BLAST results are available for this feature:
BLAST of CX069475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
APX4_SOLLC1.631e-7181.89Putative L-ascorbate peroxidase, chloroplastic OS=... [more]
APX4_ARATH5.219e-5877.24Probable L-ascorbate peroxidase 4, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_10F10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F10-K20-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069475 ID=CX069475; Name=CX069475; organism=Citrus sinensis; type=EST; length=690bp
TTTTTTTTTTTTTTTTTGAGAAATGAGGTTTATTTAGTCACTCTTAAATT
GATATGTAGAACCTGCGGCATCAATTCCCTACATAAATCTCCAACTTGCA
AAGGAATAGCTCCGCTTGACAAAAAGTTATTAGCGGCACCATTGGCACTT
CTGCTCTCGGAACACAGTCCATTTCCTGTCTACAATTTGAGTTTGCTCAA
TTCAATCTTTTGAGCAGGATATGTGTAAGCCTCGTAATTGATTTGTTGGC
CCAGGCTACTTAATTTCGTGAATGTAGTTATCAGATCGACCTCGTAATCA
GTCTGAGACACTGTTTCTCTGCTACGTTGGTATTTCTGAACCCAAGGAGA
AACATCTTTATCAGTGGCCAATAAGGCTTCTGTTGCTGCCTGATCAGGAC
CCAAGAACGCAGACATAACAGCTAGCTGGCGGGGACCAAGGCCAATTGCT
GAGAATTTATCTTTCATTTCCTGGACAGTAGCTTTCTCCCACTGGGGAAC
CCTCCCCTCTGGATCCGGCTCCTGAGCATCTGTCCTTCCAAATTGCTTTT
CAAACAGGCCCCACATTTGAGCCATATGCAGTGTACAATAAGCGCCCTTT
CTCTTCATTCCCTCCACATTTGCGGATGGCTGATGCCAAAAATGTTGTCT
TAACGGCACTTTGTGCTGCATACTGGATGAAATCGGCAAA
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