CX069469
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RM02_ORYSJ (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2) HSP 1 Score: 214.157 bits (544), Expect = 8.230e-55 Identity = 102/144 (70.83%), Postives = 124/144 (86.11%), Query Frame = -3 Query: 178 VDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYK 609 +D+NS++G+ +PLA +R+GT +H+IE +PGQG KL RAAGT AKI+KEP S CLVRLPSG EKLID+RCRATIG VSNP+HGA+KLRKAGQSRW GRRP+VRGVAMNPVDHPHGGGEGR+K GR S++PWGKP K+G++ Sbjct: 354 LDLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ-CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRRPIVRGVAMNPVDHPHGGGEGRTKG----GRPSVSPWGKPTKAGFR 492
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RM02_ORYSI (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE=2 SV=2) HSP 1 Score: 214.157 bits (544), Expect = 8.230e-55 Identity = 102/144 (70.83%), Postives = 124/144 (86.11%), Query Frame = -3 Query: 178 VDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYK 609 +D+NS++G+ +PLA +R+GT +H+IE +PGQG KL RAAGT AKI+KEP S CLVRLPSG EKLID+RCRATIG VSNP+HGA+KLRKAGQSRW GRRP+VRGVAMNPVDHPHGGGEGR+K GR S++PWGKP K+G++ Sbjct: 354 LDLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ-CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRRPIVRGVAMNPVDHPHGGGEGRTKG----GRPSVSPWGKPTKAGFR 492
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RM02_ORYSA (60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=2 SV=1) HSP 1 Score: 214.157 bits (544), Expect = 8.230e-55 Identity = 102/144 (70.83%), Postives = 124/144 (86.11%), Query Frame = -3 Query: 178 VDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYK 609 +D+NS++G+ +PLA +R+GT +H+IE +PGQG KL RAAGT AKI+KEP S CLVRLPSG EKLID+RCRATIG VSNP+HGA+KLRKAGQSRW GRRP+VRGVAMNPVDHPHGGGEGR+K GR S++PWGKP K+G++ Sbjct: 354 LDLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ-CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRRPIVRGVAMNPVDHPHGGGEGRTKG----GRPSVSPWGKPTKAGFR 492
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RM02_MARPO (60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha GN=RPL2 PE=3 SV=2) HSP 1 Score: 195.667 bits (496), Expect = 3.029e-49 Identity = 95/140 (67.86%), Postives = 113/140 (80.71%), Query Frame = -3 Query: 175 IGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKIL-KEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 591 +G+C+PLA + IGT +HNIE NPGQG KL RAAGT A+I+ K + C+VRLPSG +KLID+RCRATIG VSN +HG +K KAGQSRWLGRRP+VRGVAMNPVDHPHGGGEGR+K GR S++PWGKP K G+KT Sbjct: 359 VGNCIPLAKIPIGTWVHNIERNPGQGAKLTRAAGTFAQIIQKVENTPQCIVRLPSGVDKLIDSRCRATIGIVSNLNHGKRKFNKAGQSRWLGRRPIVRGVAMNPVDHPHGGGEGRTKG----GRPSVSPWGKPTKGGFKT 494
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RM02_RECAM (60S ribosomal protein L2, mitochondrial OS=Reclinomonas americana GN=RPL2 PE=3 SV=2) HSP 1 Score: 163.31 bits (412), Expect = 1.666e-39 Identity = 79/139 (56.83%), Postives = 107/139 (76.98%), Query Frame = -3 Query: 190 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCK 606 DI+ +IG+ +PL + IGT+IHNIE+NPG+GGK+VR+AG+SA+++ + + FC+++LPSG +L ATIG +SN + K+ KAG+SRW+GRRP+VRGVAMNPVDHPHGGGEG K+SG GR S+TPW P K Sbjct: 121 DIDIRIGNTLPLRNIPIGTMIHNIELNPGKGGKIVRSAGSSAQLISKDENGFCMLKLPSGEYRLFPNNSLATIGILSNIDNKNIKIGKAGRSRWMGRRPIVRGVAMNPVDHPHGGGEG--KTSG--GRPSVTPWSWPTK 255
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_EXIS2 (50S ribosomal protein L2 OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=rplB PE=3 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 2.406e-38 Identity = 80/151 (52.98%), Postives = 108/151 (71.52%), Query Frame = -3 Query: 175 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 627 M+ M+ V+ + ++G+ +PL+ + +GT+IHNIE+ PG+GG+LVR+AGTSA++L + + +VRL SG ++I CRAT+G V N H + KAG+SRWLG+RP VRG MNPVDHPHGGGEGR+ G G LTPWGKP GYKT Sbjct: 114 MQVMSGVEADIKVGNALPLSNIPVGTLIHNIELKPGKGGQLVRSAGTSAQLLGKD-GKYAIVRLQSGETRMILATCRATVGAVGNEEHELVNIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRA-PIGRSG--PLTPWGKPA-LGYKT 259
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BACHK (50S ribosomal protein L2 OS=Bacillus thuringiensis subsp. konkukian GN=rplB PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 9.141e-38 Identity = 81/152 (53.29%), Postives = 109/152 (71.71%), Query Frame = -3 Query: 175 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 627 M M+ + + +IG+ +PL + +GT++HNIE+ PG+GG+LVR+AGTSA++L + + LVRL SG +L+ + CRAT+G V N SH K+ KAG+SRWLG+RP VRG MNPVDHPHGGGEGRS GR S ++PWGKP G+KT Sbjct: 114 MEIMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGKE-GKYVLVRLTSGEVRLVLSACRATVGQVGNESHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPI----GRKSPMSPWGKP-TLGFKT 259
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BACCZ (50S ribosomal protein L2 OS=Bacillus cereus (strain ZK / E33L) GN=rplB PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 9.141e-38 Identity = 81/152 (53.29%), Postives = 109/152 (71.71%), Query Frame = -3 Query: 175 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 627 M M+ + + +IG+ +PL + +GT++HNIE+ PG+GG+LVR+AGTSA++L + + LVRL SG +L+ + CRAT+G V N SH K+ KAG+SRWLG+RP VRG MNPVDHPHGGGEGRS GR S ++PWGKP G+KT Sbjct: 114 MEIMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGKE-GKYVLVRLTSGEVRLVLSACRATVGQVGNESHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPI----GRKSPMSPWGKP-TLGFKT 259
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BACC7 (50S ribosomal protein L2 OS=Bacillus cereus (strain AH187) GN=rplB PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 9.141e-38 Identity = 81/152 (53.29%), Postives = 109/152 (71.71%), Query Frame = -3 Query: 175 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 627 M M+ + + +IG+ +PL + +GT++HNIE+ PG+GG+LVR+AGTSA++L + + LVRL SG +L+ + CRAT+G V N SH K+ KAG+SRWLG+RP VRG MNPVDHPHGGGEGRS GR S ++PWGKP G+KT Sbjct: 114 MEIMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGKE-GKYVLVRLTSGEVRLVLSACRATVGQVGNESHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPI----GRKSPMSPWGKP-TLGFKT 259
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BACC3 (50S ribosomal protein L2 OS=Bacillus cereus (strain 03BB102) GN=rplB PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 9.141e-38 Identity = 81/152 (53.29%), Postives = 109/152 (71.71%), Query Frame = -3 Query: 175 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 627 M M+ + + +IG+ +PL + +GT++HNIE+ PG+GG+LVR+AGTSA++L + + LVRL SG +L+ + CRAT+G V N SH K+ KAG+SRWLG+RP VRG MNPVDHPHGGGEGRS GR S ++PWGKP G+KT Sbjct: 114 MEIMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGKE-GKYVLVRLTSGEVRLVLSACRATVGQVGNESHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPI----GRKSPMSPWGKP-TLGFKT 259 The following BLAST results are available for this feature:
BLAST of CX069469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX069469 ID=CX069469; Name=CX069469; organism=Citrus sinensis; type=EST; length=887bpback to top |