CX069469

Overview
NameCX069469
Unique NameCX069469
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RM02_ORYSJ (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 8.230e-55
Identity = 102/144 (70.83%), Postives = 124/144 (86.11%), Query Frame = -3
Query:  178 VDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYK 609
            +D+NS++G+ +PLA +R+GT +H+IE +PGQG KL RAAGT AKI+KEP S  CLVRLPSG EKLID+RCRATIG VSNP+HGA+KLRKAGQSRW GRRP+VRGVAMNPVDHPHGGGEGR+K     GR S++PWGKP K+G++
Sbjct:  354 LDLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ-CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRRPIVRGVAMNPVDHPHGGGEGRTKG----GRPSVSPWGKPTKAGFR 492          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RM02_ORYSI (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 8.230e-55
Identity = 102/144 (70.83%), Postives = 124/144 (86.11%), Query Frame = -3
Query:  178 VDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYK 609
            +D+NS++G+ +PLA +R+GT +H+IE +PGQG KL RAAGT AKI+KEP S  CLVRLPSG EKLID+RCRATIG VSNP+HGA+KLRKAGQSRW GRRP+VRGVAMNPVDHPHGGGEGR+K     GR S++PWGKP K+G++
Sbjct:  354 LDLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ-CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRRPIVRGVAMNPVDHPHGGGEGRTKG----GRPSVSPWGKPTKAGFR 492          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RM02_ORYSA (60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 8.230e-55
Identity = 102/144 (70.83%), Postives = 124/144 (86.11%), Query Frame = -3
Query:  178 VDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYK 609
            +D+NS++G+ +PLA +R+GT +H+IE +PGQG KL RAAGT AKI+KEP S  CLVRLPSG EKLID+RCRATIG VSNP+HGA+KLRKAGQSRW GRRP+VRGVAMNPVDHPHGGGEGR+K     GR S++PWGKP K+G++
Sbjct:  354 LDLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ-CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRRPIVRGVAMNPVDHPHGGGEGRTKG----GRPSVSPWGKPTKAGFR 492          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RM02_MARPO (60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha GN=RPL2 PE=3 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 3.029e-49
Identity = 95/140 (67.86%), Postives = 113/140 (80.71%), Query Frame = -3
Query:  175 IGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKIL-KEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 591
            +G+C+PLA + IGT +HNIE NPGQG KL RAAGT A+I+ K   +  C+VRLPSG +KLID+RCRATIG VSN +HG +K  KAGQSRWLGRRP+VRGVAMNPVDHPHGGGEGR+K     GR S++PWGKP K G+KT
Sbjct:  359 VGNCIPLAKIPIGTWVHNIERNPGQGAKLTRAAGTFAQIIQKVENTPQCIVRLPSGVDKLIDSRCRATIGIVSNLNHGKRKFNKAGQSRWLGRRPIVRGVAMNPVDHPHGGGEGRTKG----GRPSVSPWGKPTKGGFKT 494          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RM02_RECAM (60S ribosomal protein L2, mitochondrial OS=Reclinomonas americana GN=RPL2 PE=3 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.666e-39
Identity = 79/139 (56.83%), Postives = 107/139 (76.98%), Query Frame = -3
Query:  190 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCK 606
            DI+ +IG+ +PL  + IGT+IHNIE+NPG+GGK+VR+AG+SA+++ +  + FC+++LPSG  +L      ATIG +SN  +   K+ KAG+SRW+GRRP+VRGVAMNPVDHPHGGGEG  K+SG  GR S+TPW  P K
Sbjct:  121 DIDIRIGNTLPLRNIPIGTMIHNIELNPGKGGKIVRSAGSSAQLISKDENGFCMLKLPSGEYRLFPNNSLATIGILSNIDNKNIKIGKAGRSRWMGRRPIVRGVAMNPVDHPHGGGEG--KTSG--GRPSVTPWSWPTK 255          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_EXIS2 (50S ribosomal protein L2 OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=rplB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.406e-38
Identity = 80/151 (52.98%), Postives = 108/151 (71.52%), Query Frame = -3
Query:  175 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 627
            M+ M+ V+ + ++G+ +PL+ + +GT+IHNIE+ PG+GG+LVR+AGTSA++L +    + +VRL SG  ++I   CRAT+G V N  H    + KAG+SRWLG+RP VRG  MNPVDHPHGGGEGR+   G  G   LTPWGKP   GYKT
Sbjct:  114 MQVMSGVEADIKVGNALPLSNIPVGTLIHNIELKPGKGGQLVRSAGTSAQLLGKD-GKYAIVRLQSGETRMILATCRATVGAVGNEEHELVNIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRA-PIGRSG--PLTPWGKPA-LGYKT 259          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BACHK (50S ribosomal protein L2 OS=Bacillus thuringiensis subsp. konkukian GN=rplB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.141e-38
Identity = 81/152 (53.29%), Postives = 109/152 (71.71%), Query Frame = -3
Query:  175 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 627
            M  M+  + + +IG+ +PL  + +GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+ + CRAT+G V N SH   K+ KAG+SRWLG+RP VRG  MNPVDHPHGGGEGRS      GR S ++PWGKP   G+KT
Sbjct:  114 MEIMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGKE-GKYVLVRLTSGEVRLVLSACRATVGQVGNESHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPI----GRKSPMSPWGKP-TLGFKT 259          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BACCZ (50S ribosomal protein L2 OS=Bacillus cereus (strain ZK / E33L) GN=rplB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.141e-38
Identity = 81/152 (53.29%), Postives = 109/152 (71.71%), Query Frame = -3
Query:  175 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 627
            M  M+  + + +IG+ +PL  + +GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+ + CRAT+G V N SH   K+ KAG+SRWLG+RP VRG  MNPVDHPHGGGEGRS      GR S ++PWGKP   G+KT
Sbjct:  114 MEIMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGKE-GKYVLVRLTSGEVRLVLSACRATVGQVGNESHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPI----GRKSPMSPWGKP-TLGFKT 259          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BACC7 (50S ribosomal protein L2 OS=Bacillus cereus (strain AH187) GN=rplB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.141e-38
Identity = 81/152 (53.29%), Postives = 109/152 (71.71%), Query Frame = -3
Query:  175 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 627
            M  M+  + + +IG+ +PL  + +GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+ + CRAT+G V N SH   K+ KAG+SRWLG+RP VRG  MNPVDHPHGGGEGRS      GR S ++PWGKP   G+KT
Sbjct:  114 MEIMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGKE-GKYVLVRLTSGEVRLVLSACRATVGQVGNESHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPI----GRKSPMSPWGKP-TLGFKT 259          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BACC3 (50S ribosomal protein L2 OS=Bacillus cereus (strain 03BB102) GN=rplB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.141e-38
Identity = 81/152 (53.29%), Postives = 109/152 (71.71%), Query Frame = -3
Query:  175 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 627
            M  M+  + + +IG+ +PL  + +GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+ + CRAT+G V N SH   K+ KAG+SRWLG+RP VRG  MNPVDHPHGGGEGRS      GR S ++PWGKP   G+KT
Sbjct:  114 MEIMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGKE-GKYVLVRLTSGEVRLVLSACRATVGQVGNESHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPI----GRKSPMSPWGKP-TLGFKT 259          
The following BLAST results are available for this feature:
BLAST of CX069469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RM02_ORYSJ8.230e-5570.8360S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_ORYSI8.230e-5570.8360S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_ORYSA8.230e-5570.8360S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_MARPO3.029e-4967.8660S ribosomal protein L2, mitochondrial OS=Marchan... [more]
RM02_RECAM1.666e-3956.8360S ribosomal protein L2, mitochondrial OS=Reclino... [more]
RL2_EXIS22.406e-3852.9850S ribosomal protein L2 OS=Exiguobacterium sibiri... [more]
RL2_BACHK9.141e-3853.2950S ribosomal protein L2 OS=Bacillus thuringiensis... [more]
RL2_BACCZ9.141e-3853.2950S ribosomal protein L2 OS=Bacillus cereus (strai... [more]
RL2_BACC79.141e-3853.2950S ribosomal protein L2 OS=Bacillus cereus (strai... [more]
RL2_BACC39.141e-3853.2950S ribosomal protein L2 OS=Bacillus cereus (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10F07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F07-K14-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069469 ID=CX069469; Name=CX069469; organism=Citrus sinensis; type=EST; length=887bp
CTTTTTTTTTAAGTTCAATCGGAAGTTAAACTTCAGTTTCATTATTGATC
GGTTAAAACTGGATAAAAACTAACTGCAAAGAAAACAAAATAATGTAACA
ATACTAAAAATGCTCACTAGCACAAAAGGACAATATTATCAGAAGGCTAA
TTTCTTTTTCTTCTTAGGAGATGCAGTTTTATACCCAGACTTGCAAGGCT
TGCCCCAAGGTGTAAGTGAACACCGTCCATGGTTACCACTACTTTTGCTT
CGTCCCTCACCTCCACCATGAGGATGATCAACTGGATTCATGGCTACTCC
TCTAACCACAGGTCTTCGACCCAACCAACGGCTCTGACCAGCCTTCCTAA
GCTTCTTAGCTCCATGGCTTGGGTTAGACACTGTACCAATGGTGGCTCGA
CATCTAGTGTCAATCAGTTTCTCATTACCAGAAGGTAGTCTTACTAAACA
GAAGCTTGAAGTGGGTTCTTTCAAAATCTTGGCTGACGTCCCCGCAGCTC
TAACTAGCTTGCCACCTTGTCCTGGGTTTACCTCAATGTTGTGAATGATG
GTCCCAATACGCATACAAGCAAGTGGCATGCAACTTCCAATTTGAGAATT
TATATCAACATGAGCCATCTGTCTCATTATCTTATCACGCACAGTTTCTT
TTTTTGGTTTTTCTTGTTTTGAAGGATCACCAACTAATTCGGTTTCAGAG
GACTGATAGCGATAAGTAGTGTTGTTGTTGAGAACGGAAGGACAGAGAAG
CCTGTTGAAGAGCGTCGATGAAGCTGAGCGTACTCTGCACAAAGCCATTT
CTGCTGATCTCTTTCTGTGTCTCTTTCTCCTACGTTTTGTTTTCTTCTGT
TGATTTCACTGTCTATCACAACATGTTGCCGGCGGTG
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