CX069466

Overview
NameCX069466
Unique NameCX069466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069466_ssr48 microsatellite CX069466_ssr48:48..59. BLAST: Citrus ESTs to TAIR9
Csv1_Contig6370 contig Csv1_Contig6370:119..991. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_CITSI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Citrus sinensis GN=ndhG PE=3 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.459e-72
Identity = 140/159 (88.05%), Postives = 140/159 (88.05%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                   FTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFILVFLGSGLILGGLGVVLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 159
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_GOSHI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Gossypium hirsutum GN=ndhG PE=3 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 1.013e-65
Identity = 128/159 (80.50%), Postives = 134/159 (84.28%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                    TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGA+NVLI+FAVMFMNGS+Y KDF  NLWTIG+GLTSLVCTSI  SLITTILDTSWYGIIWTTR+NQIIEQDLISNSQQIGIHL+TDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGLILGGLGVVLLTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLILFAVMFMNGSEYYKDF--NLWTIGNGLTSLVCTSILVSLITTILDTSWYGIIWTTRSNQIIEQDLISNSQQIGIHLATDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_VITVI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Vitis vinifera GN=ndhG PE=3 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 2.257e-65
Identity = 127/159 (79.87%), Postives = 133/159 (83.65%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                    TNPIYSAFSLGLV VCISLFYI SNSHFVAAAQLLIYVGA+NVLIIFAVMFMNGS+Y KDF  NLWT+GDG+TS+VCTSIF SLITTILDTSWYGIIWTTR+NQIIEQDLISNSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGLILGGLGVVLLTNPIYSAFSLGLVFVCISLFYIPSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDF--NLWTVGDGVTSVVCTSIFASLITTILDTSWYGIIWTTRSNQIIEQDLISNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_EUCGG (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=ndhG PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 8.576e-65
Identity = 124/159 (77.99%), Postives = 133/159 (83.65%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                    TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGA+N+LI+FAVMFMNGS+Y KD  LNLWT+GDG+TSLVCTSI  SL+TTILDTSWYGIIWTT++NQIIEQDLI NSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGLILGSLGVVLLTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINILILFAVMFMNGSEYYKD--LNLWTVGDGITSLVCTSILVSLMTTILDTSWYGIIWTTKSNQIIEQDLIGNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_PANGI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Panax ginseng GN=ndhG PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 9.482e-64
Identity = 124/159 (77.99%), Postives = 132/159 (83.02%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                     NPIYSAFSLGLVLVC SLFYILSNSHFVAAAQLLIYVGA+NVLI+FAVMFMNGS+Y KDF  +LWTIGDG+TS+VCTSIF SLITTI DTSWYGIIWTT++NQIIEQDLISNSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGLILGGLGVVLLPNPIYSAFSLGLVLVCTSLFYILSNSHFVAAAQLLIYVGAINVLILFAVMFMNGSEYYKDF--HLWTIGDGVTSMVCTSIFVSLITTIPDTSWYGIIWTTKSNQIIEQDLISNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_OENPA (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Oenothera parviflora GN=ndhG PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 9.482e-64
Identity = 123/159 (77.36%), Postives = 133/159 (83.65%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                    TNPI+SAFSLGLVLVCISLF+ LSNS+FVAAAQLLIYVGA+NVLI+FAVMFMNGS+YSKD  L LWT+GDG+TSLVCTSIF SLITTILDTSWYGIIWTT++NQIIEQDLI NSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGLIVGGLGVVLLTNPIFSAFSLGLVLVCISLFFSLSNSYFVAAAQLLIYVGAINVLILFAVMFMNGSEYSKD--LTLWTVGDGITSLVCTSIFISLITTILDTSWYGIIWTTKSNQIIEQDLIGNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_OENGL (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Oenothera glazioviana GN=ndhG PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 9.482e-64
Identity = 123/159 (77.36%), Postives = 133/159 (83.65%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                    TNPI+SAFSLGLVLVCISLF+ LSNS+FVAAAQLLIYVGA+NVLI+FAVMFMNGS+YSKD  L LWT+GDG+TSLVCTSIF SLITTILDTSWYGIIWTT++NQIIEQDLI NSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGLIVGGLGVVLLTNPIFSAFSLGLVLVCISLFFSLSNSYFVAAAQLLIYVGAINVLILFAVMFMNGSEYSKD--LTLWTVGDGITSLVCTSIFISLITTILDTSWYGIIWTTKSNQIIEQDLIGNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_OENEH (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Oenothera elata subsp. hookeri GN=ndhG PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 9.482e-64
Identity = 123/159 (77.36%), Postives = 133/159 (83.65%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                    TNPI+SAFSLGLVLVCISLF+ LSNS+FVAAAQLLIYVGA+NVLI+FAVMFMNGS+YSKD  L LWT+GDG+TSLVCTSIF SLITTILDTSWYGIIWTT++NQIIEQDLI NSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGLIVGGLGVVLLTNPIFSAFSLGLVLVCISLFFSLSNSYFVAAAQLLIYVGAINVLILFAVMFMNGSEYSKD--LTLWTVGDGITSLVCTSIFISLITTILDTSWYGIIWTTKSNQIIEQDLIGNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_OENBI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Oenothera biennis GN=ndhG PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 9.482e-64
Identity = 123/159 (77.36%), Postives = 133/159 (83.65%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                    TNPI+SAFSLGLVLVCISLF+ LSNS+FVAAAQLLIYVGA+NVLI+FAVMFMNGS+YSKD  L LWT+GDG+TSLVCTSIF SLITTILDTSWYGIIWTT++NQIIEQDLI NSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGLIVGGLGVVLLTNPIFSAFSLGLVLVCISLFFSLSNSYFVAAAQLLIYVGAINVLILFAVMFMNGSEYSKD--LTLWTVGDGITSLVCTSIFISLITTILDTSWYGIIWTTKSNQIIEQDLIGNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_OENAR (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Oenothera argillicola GN=ndhG PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 9.482e-64
Identity = 123/159 (77.36%), Postives = 133/159 (83.65%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                    TNPI+SAFSLGLVLVCISLF+ LSNS+FVAAAQLLIYVGA+NVLI+FAVMFMNGS+YSKD  L LWT+GDG+TSLVCTSIF SLITTILDTSWYGIIWTT++NQIIEQDLI NSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGLIVGGLGVVLLTNPIFSAFSLGLVLVCISLFFSLSNSYFVAAAQLLIYVGAINVLILFAVMFMNGSEYSKD--LTLWTVGDGITSLVCTSIFISLITTILDTSWYGIIWTTKSNQIIEQDLIGNSQQIGIHLSTDFFLPFE 157
The following BLAST results are available for this feature:
BLAST of CX069466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
NU6C_CITSI1.459e-7288.05NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_GOSHI1.013e-6580.50NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_VITVI2.257e-6579.87NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_EUCGG8.576e-6577.99NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_PANGI9.482e-6477.99NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_OENPA9.482e-6477.36NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_OENGL9.482e-6477.36NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_OENEH9.482e-6477.36NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_OENBI9.482e-6477.36NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_OENAR9.482e-6477.36NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10F05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F05-K10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069466 ID=CX069466; Name=CX069466; organism=Citrus sinensis; type=EST; length=873bp
CATCATTAACCAACTCCGTACCAATTTCGATTCATTTCAATCTGAACAAT
AATAATAATGCAAGTGATTTGGTTGCTTAGAATATACCAGGTACGGAACA
AAAGAATCCATTTGGTAATAGATCGAATAAAAAAAATTCTATTTTGATTT
TCTATTGATCTGTGAATAGTATTCAACTAGACTTTTCAAGAATTTAAGGG
AAATGAATGTGATAACACATAATGAATGTGATAACACATAAAAAGTCGAA
TTGGGATTGCTGTTCCTAGTTATAAAGATTTGTTATTGACGCGCCACGGC
AATTGCACCTATTAAAGCAACTAAAAGAATTATTGAAACGAGTTCAAATG
GAAGAAAAAAGTCTGTTGATAAATGAATTCCAATTTGTTGACTATTACTT
ATCAAATCTTGTTCAATAATCTGGTTGGCTCGTGTAGTCCAAATAATCCC
GTACCACGATGTATCGAGAATAGTAGTGATTAGCGAAAAAAAAATACTTG
TACAAACCAGAGAAGTAAGACCATCGCCAATAGTCCAAAGATTCAACTGA
AAATCTTTGGAATAGTCTGAGCCGTTCATGAACATTACAGCAAATATGAT
TAAAACATTTACAGCTCCCACGTAAATAAGGAGTTGCGCGGCAGCTACAA
AATGGGAATTTGATAGAATATAGAATAATGATATACAAACAAGAACCAAT
CCCAAGGAAAAGGCAGAATAAATTGGGTTGGTAAATAATACCACTCCCAG
ACCTCCTAATATAAGACCCGATCCCAGAAAAACTAAAATAAAATCGTGTA
TTGGTCCAGGCAAATCCATTATATTAAAATAGGAGATAAATAAATCGAAA
TCTTTTTCATGACCTTATTGAGC
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