CX069464

Overview
NameCX069464
Unique NameCX069464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4039 contig Csv1_Contig4039:1..800. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_CITSI (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Citrus sinensis GN=ndhJ PE=3 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.589e-91
Identity = 157/158 (99.37%), Postives = 157/158 (99.37%), Query Frame = 2
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRL RILMPESWIGWPLRKDYIAPNFYEIQDAY
Sbjct:    1 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAY 158          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_SPIOL (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Spinacia oleracea GN=ndhJ PE=3 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 3.663e-88
Identity = 149/158 (94.30%), Postives = 153/158 (96.84%), Query Frame = 2
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHS+AVILY+YGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPR NP+IPSVFWVWKSA+FQERESYDM GI YDNHPRL RILMPESWIGWPLRKDYI PNFYEIQDAY
Sbjct:    1 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRRNPRIPSVFWVWKSADFQERESYDMFGISYDNHPRLKRILMPESWIGWPLRKDYIVPNFYEIQDAY 158          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_MANES (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Manihot esculenta GN=ndhJ PE=3 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 4.784e-88
Identity = 148/158 (93.67%), Postives = 154/158 (97.47%), Query Frame = 2
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQGRLSAWLVKHGLVHR LGFDYQGIETLQIKPEDWHS+AVILY+YGYNYLRSQCAYDVAPGGLLASVYHLTRIEYG+DQPEEVCIKVFAPR NP+IPSVFWVWKSA+FQERESYDMLGI YDNHPRL RILMPESWIGWPLRKDYIAPNFYEIQDA+
Sbjct:    1 MQGRLSAWLVKHGLVHRFLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAPRKNPRIPSVFWVWKSADFQERESYDMLGIFYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_CARPA (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Carica papaya GN=ndhJ PE=3 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 4.784e-88
Identity = 149/158 (94.30%), Postives = 154/158 (97.47%), Query Frame = 2
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQG LS WLVKHGLVHRSLGFDYQGIETLQIKPEDWHS+AVILY+YGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNP+IPSVFWVWKSA+FQERESYDMLGI YDNHPRL RILMPESWIGWPLRKDYIAPNFYEIQDA+
Sbjct:    1 MQGHLSVWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPRIPSVFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_GOSHI (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Gossypium hirsutum GN=ndhJ PE=3 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 8.159e-88
Identity = 148/158 (93.67%), Postives = 155/158 (98.10%), Query Frame = 2
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQGRLS WLVKHGLVHRSLGFDYQGIETLQIKPEDWHS+AVILY+YGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNP+IPSVFWVWKS++FQERESYDMLGI Y+NHPRL RILMPESWIGWPLRKDYIAPNFYEIQDA+
Sbjct:    1 MQGRLSVWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPRIPSVFWVWKSSDFQERESYDMLGISYENHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_GOSBA (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Gossypium barbadense GN=ndhJ PE=3 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 8.159e-88
Identity = 148/158 (93.67%), Postives = 155/158 (98.10%), Query Frame = 2
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQGRLS WLVKHGLVHRSLGFDYQGIETLQIKPEDWHS+AVILY+YGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNP+IPSVFWVWKS++FQERESYDMLGI Y+NHPRL RILMPESWIGWPLRKDYIAPNFYEIQDA+
Sbjct:    1 MQGRLSVWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPRIPSVFWVWKSSDFQERESYDMLGISYENHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_VITVI (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Vitis vinifera GN=ndhJ PE=3 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.392e-87
Identity = 149/158 (94.30%), Postives = 154/158 (97.47%), Query Frame = 2
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHS+AVILY+YGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFA R NP+IPSVFWVWKSA+FQERESYDMLGI YDNHPRL RILMPESWIGWPLRKDYIAPNFYEIQDA+
Sbjct:    1 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFASRRNPRIPSVFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_EUCGG (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=ndhJ PE=3 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 1.818e-87
Identity = 147/158 (93.04%), Postives = 154/158 (97.47%), Query Frame = 2
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHS+AVILY+YGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPR NP+IPSVFW+WKSA+FQERESYDMLGI YD HPRL RILMPE+WIGWPLRKDYIAPNFYEIQDA+
Sbjct:    1 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRRNPRIPSVFWIWKSADFQERESYDMLGICYDTHPRLKRILMPETWIGWPLRKDYIAPNFYEIQDAH 158          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_OENPA (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Oenothera parviflora GN=ndhJ PE=3 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 2.374e-87
Identity = 148/158 (93.67%), Postives = 155/158 (98.10%), Query Frame = 2
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPE+WHS+AVILY+YGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQ EEVCIKVFAPR+NP+IPSVFWVWKSA+FQERESYDMLGI YDNHPRL RILMPESWIGWPLRKDYIAPNFYEIQDA+
Sbjct:    1 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQAEEVCIKVFAPRNNPRIPSVFWVWKSADFQERESYDMLGIRYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_OENGL (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Oenothera glazioviana GN=ndhJ PE=3 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 2.374e-87
Identity = 148/158 (93.67%), Postives = 155/158 (98.10%), Query Frame = 2
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPE+WHS+AVILY+YGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQ EEVCIKVFAPR+NP+IPSVFWVWKSA+FQERESYDMLGI YDNHPRL RILMPESWIGWPLRKDYIAPNFYEIQDA+
Sbjct:    1 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQAEEVCIKVFAPRNNPRIPSVFWVWKSADFQERESYDMLGIRYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158          
The following BLAST results are available for this feature:
BLAST of CX069464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
NDHJ_CITSI1.589e-9199.37NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_SPIOL3.663e-8894.30NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_MANES4.784e-8893.67NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_CARPA4.784e-8894.30NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_GOSHI8.159e-8893.67NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_GOSBA8.159e-8893.67NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_VITVI1.392e-8794.30NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_EUCGG1.818e-8793.04NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_OENPA2.374e-8793.67NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_OENGL2.374e-8793.67NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10F04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F04-K8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069464 ID=CX069464; Name=CX069464; organism=Citrus sinensis; type=EST; length=800bp
AAATCTATGAAGATCGAATTCGATTGCAACGGGAGAATCGCTCGTTTACT
TTTACTACCAATCACAAGTTTCGTGTTGTATGCAGTACTAATACTGGAAA
TTATGATCAAGGATTACTTTATCAACCACCATCTACGTCAGAAATCCCGC
CTGAAACCTTTTTCAAATACAAAAGTTCAGTATCTTCCCCCGAATTCATT
AATTAGGCAGGAGGATTCATTTGTACAGAATAAGAAAGAGCGAATTAATC
TTCATAAATTCCAAAAATTCATCGTAAATGTGAAATATTTATCGAAATCA
AAATGTGGGAGAGATAAAAAAGATGCAGGGTCGTTTGTCTGCTTGGCTGG
TCAAGCATGGGCTAGTTCATAGATCTTTGGGCTTTGATTACCAAGGAATA
GAAACTTTACAAATAAAGCCCGAGGATTGGCACTCCGTTGCTGTCATTTT
GTATATATATGGCTACAATTATCTACGGTCCCAATGTGCCTATGATGTAG
CACCGGGCGGACTGTTAGCCAGTGTGTATCATCTTACGCGAATAGAGTAT
GGTGTAGATCAACCAGAAGAGGTATGCATAAAAGTATTTGCTCCAAGGAG
TAATCCTAAAATTCCATCGGTTTTCTGGGTTTGGAAAAGTGCGAATTTTC
AAGAACGGGAATCTTATGATATGCTGGGAATCCTTTATGATAATCATCCA
CGACTGANACGTATCTTAATGCCTGAAAGTTGGATAGGGTGGCCCTTACG
TAAGGATTATATTGCCCCCAATTTTTATGAAATACAAGATGCTTATTGAA
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