CX069363

Overview
NameCX069363
Unique NameCX069363
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069363 vs. ExPASy Swiss-Prot
Match: TMVRN_NICGU (TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.065e-16
Identity = 45/82 (54.88%), Postives = 59/82 (71.95%), Query Frame = 3
Query:  309 MASTSIQNVFNGKYDVFLSFRRENTRKSFMGHLYVALENKGIYVFRDDKELEKGGSISPGLLKAIEESRISVIVLSINYASS 554
            MAS+S  + ++  YDVFLSFR E+TRK+F  HLY  L +KGI  F+DDK LE G +I   L KAIEES+ +++V S NYA+S
Sbjct:    1 MASSSSSSRWS--YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIVVFSENYATS 80          
The following BLAST results are available for this feature:
BLAST of CX069363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TMVRN_NICGU6.065e-1654.88TMV resistance protein N OS=Nicotiana glutinosa GN... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_10A03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10A03-A6-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069363 ID=CX069363; Name=CX069363; organism=Citrus sinensis; type=EST; length=668bp
GGAAAAATTAAATTTAAATTACCTGCTACAACTTTTGGGATTTGTTTACT
ATGATTTTTCCTTTTTGTAAAGTAAGGATAACATTAAGTTGTGCAAAGAT
AAAAGTAGAAATTTAGTTCACATGTAACATAAACTTAAGTGATCACGTTA
AATAATTGATTTCTAGTTACAACTTTGACATGCACATTTCATTTTTGTGA
AGCCCGTAATTTTGGATTAGTTTTGTTGCTTGCATAGTATTAATGGGCAT
ATTGTTCCCAGGATTTCACGTGAGTTTTTTTAAATTTTCTGGAACAAATT
AATAGACAATGGCTTCAACGAGCATCCAAAATGTCTTTAATGGGAAATAT
GATGTCTTCTTAAGTTTTAGAAGAGAAAACACCCGTAAAAGCTTCATGGG
TCATCTCTATGTGGCTTTGGAAAATAAAGGCATTTATGTATTCAGGGATG
ACAAAGAACTTGAGAAAGGAGGATCCATTTCACCTGGACTGCTTAAAGCA
ATTGAAGAATCAAGAATTTCAGTTATTGTTCTCTCGATAAACTATGCGTC
TTCAACTGAAGAAGTTTCCACAGATTGTGACAACTATGAAAGATCTGTCA
GAGCTCAATCTAGATGGAACTTCCATTACAGAAGTGCCATCATCTATTGA
ACTTTTGCCTGGACTTGA
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