CX054045

Overview
NameCX054045
Unique NameCX054045
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4270 contig Csv1_Contig4270:1..929. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX054045 vs. ExPASy Swiss-Prot
Match: PP178_ARATH (Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1)

HSP 1 Score: 408.297 bits (1048), Expect = 3.176e-113
Identity = 200/256 (78.12%), Postives = 224/256 (87.50%), Query Frame = -1
Query:  165 FGQLVAEKAVKGKKE-NRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLLSILTGWGKHSKVVGDGALRRAVEVLLTGMGAPFWVANCNLGRFISTGPMVASWLRESGTLKVLVLHDDRT 929
            FGQL  E   +  K+     QE+ CIL VF+KMH+L+IKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDN+VYGV HGLLMG R+N+W+QA SLFD+V  MD STASAFYNALTDMLWHFGQKRGA+LV LEG+ RQVWENVWS+SCLDLHLMSSGAARAMVHAWLLNI SIV+EGHELPK+LSILTGWGKHSKVVGDGALRRAVEVLL GM APF ++ CN+GRF S+G +VA+WLRES TLK+L+LHD  T
Sbjct:  634 FGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLMGQRENVWLQAQSLFDKVNEMDGSTASAFYNALTDMLWHFGQKRGAELVALEGRSRQVWENVWSDSCLDLHLMSSGAARAMVHAWLLNIRSIVYEGHELPKVLSILTGWGKHSKVVGDGALRRAVEVLLRGMDAPFHLSKCNMGRFTSSGSVVATWLRESATLKLLILHDHIT 889          
BLAST of CX054045 vs. ExPASy Swiss-Prot
Match: PPR49_ARATH (Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.284e-13
Identity = 60/226 (26.55%), Postives = 103/226 (45.58%), Query Frame = -1
Query:  204 VFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYR------DNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWSE-SC----LDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLLSILTGWGKHSKVVGDGALRRAVEVLLTGMGAPFWVANCNLGRFISTGPMVASWLRES 848
            + Q M  L ++P++ T++ +L+ C+   S  D     + +    +     AH  L+         +N+   A +  D +   D  +     +A+ D L   GQK  A  V     ++ V+ +   E SC    ++LH+MS G A   +   L      +      P  + I+TGWG+ S+V G   +R+AVE LL   G+PF+  + N G F+ +G  +  WL +S
Sbjct:  631 LLQNMLALGLRPSLQTYTLLLSCCTDGRSKLDMGFCGQLMASTGHP----AHMFLLKMPAAGPDGENVRNHANNFLDLMHSEDRESKRGLVDAVVDFLHKSGQKEEAGSVWEVAAQKNVFPDALREKSCSYWLINLHVMSEGTAVTALSRTLAWFRKQMLASGTCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFGSPFFTESGNSGCFVGSGEPLNRWLLQS 852          
BLAST of CX054045 vs. ExPASy Swiss-Prot
Match: PP123_ARATH (Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.395e-12
Identity = 56/222 (25.23%), Postives = 97/222 (43.69%), Query Frame = -1
Query:  204 VFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQ--ALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVW-----ENVWSESCLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLLSILTGWGKHSKVVGDGALRRAVEVLLTGMGAPFWVANCNLGRFISTGPMVASWLRES 848
            + Q M  L + P++ T++ +L+ C+   S  D     + + +  +  +     +     D   V+    +  D +   D  +     +A+ D L   G K  A  V      + V+     E  +S   ++LH+MS G A   +   L      +    + P  + I+TGWG+ S+V G   +R+AVE LL     PF+  N N G F+ +G  + +WL ES
Sbjct:  626 LLQSMLALGLHPSLQTYTLLLSCCTDARSNFDMGFCGQLMAVSGHPAHMFLLKMPPAGPDGQKVRDHVSNFLDFMHSEDRESKRGLMDAVVDFLHKSGLKEEAGSVWEVAAGKNVYPDALREKSYSYWLINLHVMSEGTAVIALSRTLAWFRKQMLVSGDCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFNFPFFTENGNSGCFVGSGEPLKNWLLES 847          
The following BLAST results are available for this feature:
BLAST of CX054045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PP178_ARATH3.176e-11378.13Pentatricopeptide repeat-containing protein At2g31... [more]
PPR49_ARATH1.284e-1326.55Pentatricopeptide repeat-containing protein At1g18... [more]
PP123_ARATH5.395e-1225.23Pentatricopeptide repeat-containing protein At1g74... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_9H07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-9H07-O14-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX054045 ID=CX054045; Name=CX054045; organism=Citrus sinensis; type=EST; length=929bp
TTTAGAGCACAAAACATGAAGCTGTATATGTTCATTTTCTGATGCTACTA
TAAACATGTAGGGAAATGGGAAAAAAATAAAAATAAAAAGTAAACAGATT
CGAACAGCTACAAGGTAAGAGTCTGCATATTGAGCATTTCATCAAACCCT
GCATTTTCTGAATGAGTTCTATCATCATGAAGAACAAGCACCTTTAACGT
GCCAGATTCTCTTAACCAAGAAGCGACCATGGGTCCTGTTGATATAAATC
TGCCTAAGTTGCAGTTTGCTACCCAAAATGGTGCACCCATTCCAGTGAGG
AGCACCTCAACAGCTCGCCTTAGTGCACCATCCCCCACAACTTTGCTGTG
TTTGCCCCATCCAGTCAAGATGCTTAACAGTTTTGGTAATTCGTGACCTT
CAAACACAATTGAGTGTATGTTCAGTAACCATGCATGAACCATTGCTCGA
GCAGCGCCAGAAGACATGAGATGCAAATCTAAGCACGACTCAGACCACAC
ATTCTCCCATACTTGCCGACGTTTACCTTCTAGCACGACCAGCTGGGCTC
CTCGTTTCTGACCAAAGTGCCAGAGCATGTCAGTCAGAGCATTATAAAAG
GCAGAAGCAGTAGACGAGTCCATCAGCTTTACTTCGTCAAAGAGGGACAG
GGCTTGAACCCAGATATTATCCCTATAACCCATAAGAAGTCCATGTGCCA
CACCATAGACCTGATTATCAAACAAACGAAGCTCTTCCAATAACATTGAG
GCATCTTCAAATGAATTACAACGGCTGCAAGCATTTAGAATGGCTGAAAA
AGTAACAACGTTTGGTTTAATTTTCAGCTTATGCATCTTTTGAAAGACAC
CCAAAATGCACAAAATCTCCTGTCTACATCTGTTCTCTTTCTTCCCTTTG
ACTGCTTTCTCAGCAACTAGCTGCCCAAA
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