CX054042

Overview
NameCX054042
Unique NameCX054042
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX054042_ssr90 microsatellite CX054042_ssr90:90..101. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX054042 vs. ExPASy Swiss-Prot
Match: GDL38_ARATH (GDSL esterase/lipase At2g23540 OS=Arabidopsis thaliana GN=At2g23540 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.642e-18
Identity = 41/51 (80.39%), Postives = 47/51 (92.16%), Query Frame = -2 
Query:  710 AGIIPCGPTSSMCQDRSKHVFWDPYHPSEAANLIIAKQLLDGDRKYISPMN 862
            AGIIPCGPTSS+C++R K+VFWDPYHPSEAAN+IIAKQLL GD K ISP+N
Sbjct:  330 AGIIPCGPTSSLCEERDKYVFWDPYHPSEAANVIIAKQLLYGDVKVISPVN 380
[Close]
BLAST of CX054042 vs. ExPASy Swiss-Prot
Match: GDL58_ARATH (GDSL esterase/lipase At3g50400 OS=Arabidopsis thaliana GN=At3g50400 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.814e-17
Identity = 37/51 (72.55%), Postives = 45/51 (88.24%), Query Frame = -2 
Query:  710 AGIIPCGPTSSMCQDRSKHVFWDPYHPSEAANLIIAKQLLDGDRKYISPMN 862
            AGI+PCGPTSS+C DRSKHVFWD YHP+EAANL+IA +LL GD K+++P N
Sbjct:  317 AGILPCGPTSSLCTDRSKHVFWDAYHPTEAANLLIADKLLYGDSKFVTPFN 367
[Close]
BLAST of CX054042 vs. ExPASy Swiss-Prot
Match: GDL64_ARATH (GDSL esterase/lipase At4g16230 OS=Arabidopsis thaliana GN=At4g16230 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.663e-15
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = -2 
Query:  710 GIIPCGPTSSMCQDRSKHVFWDPYHPSEAANLIIAKQLLDGDRKYISPMN 859
            G+IPCGP S +C DRSK+VFWDPYHP+EAAN+IIA++LL GD   I P+N
Sbjct:  308 GLIPCGPPSKVCMDRSKYVFWDPYHPTEAANIIIARRLLSGDTSDIYPIN 357
The following BLAST results are available for this feature:
BLAST of CX054042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GDL38_ARATH2.642e-1880.39GDSL esterase/lipase At2g23540 OS=Arabidopsis thal... [more]
GDL58_ARATH3.814e-1772.55GDSL esterase/lipase At3g50400 OS=Arabidopsis thal... [more]
GDL64_ARATH4.663e-1568.00GDSL esterase/lipase At4g16230 OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_9H04_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-9H04-O8-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX054042 ID=CX054042; Name=CX054042; organism=Citrus sinensis; type=EST; length=863bp
TTGCTTTTCTACCTGCCTACTGCTTTGTCTTTTAAACAACTTTTAAAAAA
AGAAAAAAAAATGGGGAAATTGGTTTTGTGGATAAGAAAAAACAAACAAA
CACGTTTTAATTAAAGGTACAAGTTATTACTGCATTTTGATACATAAATT
TCCAAATGACGTGTTGAATATATTCTTTAATCAACAAACAAATAGATGAT
TCCAAACACGCCATTGATTAATTGCATAGAGATCAGAGGGATATTAATTT
CTTTTTTGCTAATTAAAGTTAAGAACATAGGTTAGCTAGATTCTTCTAGT
TCATTCTGATATTGATTTCGTATTGTTGAACACGGCGTCACTGAACACAA
AGCTAATCGGTACACTAACCACAGGAATTATATATCAATGCAGATCACCA
ACCATCATCTACGTACATTGACTATATTATTTATTGCTTTCAAAAGAAGT
ATTTGAAGCCAACAATAAAGGTTTAGTTGTCCAATTTTCAGGATCAATCA
AAGCTTGTAAAGGTCCTTAAAAAATAAAAAATAAAAAAAAGGAAGATGAA
GAAAAACAAAACTACGGAATTAAACAAGAAAACCTGGGACTTTTCTTCGA
AGAAGGGAAGAGAATGTACGTAATTTTAATTTAATGAGGACACAACAGAT
GCACGATATTTAATATTGCACTAGTAAGCGATTAACTAAAGAGCTCGAAG
CCGTCTGAGATTCATTGGGGAAATGTACTTTCTGTCCCCGTCGAGAAGTT
GCTTGGCAATAATAAGATTGGCAGCTTCACTTGGATGATAGGGGTCCCAG
AATACGTGCTTGGACCGATCCTGGCACATACTGGACGTTGGCCCACATGG
AATTATTCCGGCA
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