CX054036

Overview
NameCX054036
Unique NameCX054036
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX054036 vs. ExPASy Swiss-Prot
Match: EF1G_PRUAV (Elongation factor 1-gamma OS=Prunus avium PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.171e-26
Identity = 64/128 (50.00%), Postives = 72/128 (56.25%), Query Frame = 2
Query:  437 AHIEQWIDFSSLEIDTNILRWFIPRVGFAVYLPQVFQHLPPYPXXXXXXXXXXXXXXAYDLLLICAKAEEXXXXXXXXXXXXXNTHLASNTYLVGHSVTLADIIMTCNLTLGFSRILSKSFTSEFPHI 820
            AHIEQWIDF SLEID NI+ WF PR G+AVYLP                                  AEE             NTHLASNTYLVGH VTLADII+TCNL  GF++++ KSFTSEFPH+
Sbjct:   92 AHIEQWIDFGSLEIDANIISWFRPRFGYAVYLPP---------------------------------AEEAAISALKRALGALNTHLASNTYLVGHFVTLADIIVTCNLFFGFTKLMIKSFTSEFPHV 186          
BLAST of CX054036 vs. ExPASy Swiss-Prot
Match: EF1G1_ORYSJ (Elongation factor 1-gamma 1 OS=Oryza sativa subsp. japonica GN=Os02g0220600 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.867e-25
Identity = 60/128 (46.88%), Postives = 73/128 (57.03%), Query Frame = 2
Query:  437 AHIEQWIDFSSLEIDTNILRWFIPRVGFAVYLPQVFQHLPPYPXXXXXXXXXXXXXXAYDLLLICAKAEEXXXXXXXXXXXXXNTHLASNTYLVGHSVTLADIIMTCNLTLGFSRILSKSFTSEFPHI 820
            AHIEQWIDFS+ E+D N  +W  PR+GFA Y+                                 A +EE             NTHLASNTYLVGHSVTLADI+MTCNL +GF+RI++K+FTSEFPH+
Sbjct:   92 AHIEQWIDFSATEVDANTGKWLFPRLGFAPYV---------------------------------AVSEEAAIAALKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYMGFARIMTKNFTSEFPHV 186          
BLAST of CX054036 vs. ExPASy Swiss-Prot
Match: EF1G2_ARATH (Probable elongation factor 1-gamma 2 OS=Arabidopsis thaliana GN=At1g57720 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.752e-24
Identity = 62/139 (44.60%), Postives = 75/139 (53.96%), Query Frame = 2
Query:  404 DSYNCHSWFWQAHIEQWIDFSSLEIDTNILRWFIPRVGFAVYLPQVFQHLPPYPXXXXXXXXXXXXXXAYDLLLICAKAEEXXXXXXXXXXXXXNTHLASNTYLVGHSVTLADIIMTCNLTLGFSRILSKSFTSEFPHI 820
            +S N  S    AHIEQWIDFSSLEID N+L+WF PR+G+A +                                  A AEE             NTHLASNT+LVGHSVTLADI+  CNL LGF+ +++K FTS FPH+
Sbjct:   81 NSLNGSSLIEYAHIEQWIDFSSLEIDANMLKWFAPRMGYAPF---------------------------------SAPAEEAAISALKRGLEALNTHLASNTFLVGHSVTLADIVTICNLNLGFATVMTKKFTSAFPHV 186          
BLAST of CX054036 vs. ExPASy Swiss-Prot
Match: EF1G3_ORYSJ (Elongation factor 1-gamma 3 OS=Oryza sativa subsp. japonica GN=Os06g0571400 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.289e-24
Identity = 61/128 (47.66%), Postives = 70/128 (54.69%), Query Frame = 2
Query:  437 AHIEQWIDFSSLEIDTNILRWFIPRVGFAVYLPQVFQHLPPYPXXXXXXXXXXXXXXAYDLLLICAKAEEXXXXXXXXXXXXXNTHLASNTYLVGHSVTLADIIMTCNLTLGFSRILSKSFTSEFPHI 820
            +HIEQW+DFS+ E+D NI RW  PR+GF  Y+P +                                 EE             NTHLASNTYLVGHSVTLADI+MTCNL  GF RIL KSFTSEFPH+
Sbjct:   92 SHIEQWMDFSATEVDANIGRWLYPRLGFGPYVPVL---------------------------------EEFAITSLKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYYGFVRILIKSFTSEFPHV 186          
BLAST of CX054036 vs. ExPASy Swiss-Prot
Match: EF1G2_ORYSJ (Elongation factor 1-gamma 2 OS=Oryza sativa subsp. japonica GN=Os02g0220500 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.904e-24
Identity = 60/128 (46.88%), Postives = 72/128 (56.25%), Query Frame = 2
Query:  437 AHIEQWIDFSSLEIDTNILRWFIPRVGFAVYLPQVFQHLPPYPXXXXXXXXXXXXXXAYDLLLICAKAEEXXXXXXXXXXXXXNTHLASNTYLVGHSVTLADIIMTCNLTLGFSRILSKSFTSEFPHI 820
            AHIEQW DFS+ E+D NI +W  PR+G A Y+                                 A +EE             NTHLASNTYLVGHSVTLADI+MTCNL +GF+RI++KSFTSEFPH+
Sbjct:   92 AHIEQWNDFSATEVDANIGKWLYPRLGIAPYV---------------------------------AVSEEAAIAALKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYMGFARIMTKSFTSEFPHV 186          
BLAST of CX054036 vs. ExPASy Swiss-Prot
Match: EF1G1_ARATH (Probable elongation factor 1-gamma 1 OS=Arabidopsis thaliana GN=At1g09640 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.531e-23
Identity = 63/139 (45.32%), Postives = 72/139 (51.80%), Query Frame = 2
Query:  404 DSYNCHSWFWQAHIEQWIDFSSLEIDTNILRWFIPRVGFAVYLPQVFQHLPPYPXXXXXXXXXXXXXXAYDLLLICAKAEEXXXXXXXXXXXXXNTHLASNTYLVGHSVTLADIIMTCNLTLGFSRILSKSFTSEFPHI 820
            +S N  S    A IEQWIDFSSLEI  +ILRWF PR+GF  Y                                  A AEE             NTHL SNTYLVGHS+TLADII  CNL LGF+ +++K FTSEFPH+
Sbjct:   81 NSLNGSSLIEYAQIEQWIDFSSLEIYASILRWFGPRMGFMPY---------------------------------SAPAEEGAISTLKRALDALNTHLTSNTYLVGHSITLADIITVCNLNLGFATVMTKKFTSEFPHV 186          
The following BLAST results are available for this feature:
BLAST of CX054036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
EF1G_PRUAV4.171e-2650.00Elongation factor 1-gamma OS=Prunus avium PE=2 SV=... [more]
EF1G1_ORYSJ7.867e-2546.88Elongation factor 1-gamma 1 OS=Oryza sativa subsp.... [more]
EF1G2_ARATH1.752e-2444.60Probable elongation factor 1-gamma 2 OS=Arabidopsi... [more]
EF1G3_ORYSJ2.289e-2447.66Elongation factor 1-gamma 3 OS=Oryza sativa subsp.... [more]
EF1G2_ORYSJ3.904e-2446.88Elongation factor 1-gamma 2 OS=Oryza sativa subsp.... [more]
EF1G1_ARATH2.531e-2345.32Probable elongation factor 1-gamma 1 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_9H01_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-9H01-O2-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX054036 ID=CX054036; Name=CX054036; organism=Citrus sinensis; type=EST; length=822bp
GACCCATCTTCGAGAGTAATGCCATTGCACGATATGGTGAGGCCATTTGT
TAGATTCTCCACTTGATTGTTTAGTATATTCTATTAAGATTAGACTTTGT
GTGATCTGTCTTTACCTGCTGCAGTTGCACGCTTGAAAGCTGACAACCCA
CTGTTGGGCTCGTCTTTAATTGATTCTGTAAGTTATGTGATGGCTGTTAA
TATGGGTTTTTAACTAGATTCTGTTTACTTGTTTTCTCCTTTTTTTTGGG
GGATAATATTTTTTATTTTTTGTGTTTATTTAAATTTATAATGTAAGTTC
ATATCTATTGGTGTACAAATTGATTTCTTGTTCGCTCAAAAAATGTTTGC
CCTTTTGAAAATGAGTTTCTTGTTTTTAGTTTCTTTTTCCCCTTCTTTCT
TTTGATAGTTATAATTGTCATTCTTGGTTTTGGCAGGCTCATATTGAGCA
GTGGATTGATTTCTCATCATTAGAAATTGACACCAATATTTTGCGTTGGT
TTATACCAAGAGTTGGTTTCGCAGTGTACCTTCCTCAGGTTTTCCAACAT
TTGCCGCCGTATCCATTTAAATTCTGCTTTCACTCTTTCTTTTTTATTCA
TTATTTTGCTTATGATTTACTTTTAATCTGTGCAAAGGCTGAGGAAGCTG
CAATTGCTTCTTTGAAGAGAGCTCTAGCTGCATTGAATACACATCTCGCT
TCCAACACTTACTTAGTTGGCCATTCAGTGACTTTGGCTGATATCATTAT
GACATGTAACTTGACGTTGGGATTCAGTCGGATCCTGTCCAAGAGCTTTA
CATCAGAATTCCCTCACATTGA
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