CX054035

Overview
NameCX054035
Unique NameCX054035
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX054035_ssr238 microsatellite CX054035_ssr238:238..249. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX054035 vs. ExPASy Swiss-Prot
Match: EF1G_PRUAV (Elongation factor 1-gamma OS=Prunus avium PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 2.041e-66
Identity = 113/130 (86.92%), Postives = 124/130 (95.38%), Query Frame = -1
Query:  288 ISFVGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIPQFIMDECYDMELYDWKKVDINDEAQKERVSQMIEDHEPFEGEALLDAKCFK 677
            ++  GFWDMYDPEGYSLWFC+YKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKML+IGSEPPFKVKGLWLFRGQEIP F+M+ECYDMELY+W KVD++DE QKERV+Q+IED EPFEGEALLDAKCFK
Sbjct:  293 VAIKGFWDMYDPEGYSLWFCEYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQEIPPFVMEECYDMELYNWTKVDLSDENQKERVNQVIEDQEPFEGEALLDAKCFK 422          
BLAST of CX054035 vs. ExPASy Swiss-Prot
Match: EF1G1_ORYSJ (Elongation factor 1-gamma 1 OS=Oryza sativa subsp. japonica GN=Os02g0220600 PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 7.757e-66
Identity = 114/130 (87.69%), Postives = 122/130 (93.85%), Query Frame = -1
Query:  288 ISFVGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIPQFIMDECYDMELYDWKKVDINDEAQKERVSQMIEDHEPFEGEALLDAKCFK 677
            ++  GFWDMYDPEGYSLWFCDYKYNDENTVSFVT+NKVGGFLQRMDL RKYAFGKML+IGSEPPFKVKGLWLFRG EIP+F+MDE YDMELY+W KVDI+DEAQKERVS MIED EPFEGEALLDAKCFK
Sbjct:  289 VAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEIPKFVMDEVYDMELYEWTKVDISDEAQKERVSAMIEDLEPFEGEALLDAKCFK 418          
BLAST of CX054035 vs. ExPASy Swiss-Prot
Match: EF1G2_ORYSJ (Elongation factor 1-gamma 2 OS=Oryza sativa subsp. japonica GN=Os02g0220500 PE=2 SV=2)

HSP 1 Score: 249.595 bits (636), Expect = 1.728e-65
Identity = 113/130 (86.92%), Postives = 122/130 (93.85%), Query Frame = -1
Query:  288 ISFVGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIPQFIMDECYDMELYDWKKVDINDEAQKERVSQMIEDHEPFEGEALLDAKCFK 677
            ++  GFWDMYDPEGYSLWFCDYKYNDENTVSFVT+NKVGGFLQRMDL RKYAFGKML+IGSEPPFKVKGLWLFRG EIP+F+MDE YDMELY+W KVDI+DEAQKERVS MIED EPFEGE+LLDAKCFK
Sbjct:  289 VAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEIPKFVMDEVYDMELYEWTKVDISDEAQKERVSAMIEDLEPFEGESLLDAKCFK 418          
BLAST of CX054035 vs. ExPASy Swiss-Prot
Match: EF1G2_ARATH (Probable elongation factor 1-gamma 2 OS=Arabidopsis thaliana GN=At1g57720 PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 6.567e-65
Identity = 115/130 (88.46%), Postives = 121/130 (93.08%), Query Frame = -1
Query:  288 ISFVGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIPQFIMDECYDMELYDWKKVDINDEAQKERVSQMIEDHEPFEGEALLDAKCFK 677
            ++  GFWDMYDPEGYSLWFCDYKYNDEN VSFVTLNKVGGFLQRMDLARKY+FGKMLI GSE PFKVKGLWLFRG EIP+FIMDE YDMELY+W KVDI+DEAQKERVSQMIED EPFEGEALLDAKCFK
Sbjct:  284 VAIKGFWDMYDPEGYSLWFCDYKYNDENMVSFVTLNKVGGFLQRMDLARKYSFGKMLICGSEGPFKVKGLWLFRGPEIPKFIMDEVYDMELYEWTKVDISDEAQKERVSQMIEDAEPFEGEALLDAKCFK 413          
BLAST of CX054035 vs. ExPASy Swiss-Prot
Match: EF1G1_ARATH (Probable elongation factor 1-gamma 1 OS=Arabidopsis thaliana GN=At1g09640 PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 6.567e-65
Identity = 115/130 (88.46%), Postives = 121/130 (93.08%), Query Frame = -1
Query:  288 ISFVGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIPQFIMDECYDMELYDWKKVDINDEAQKERVSQMIEDHEPFEGEALLDAKCFK 677
            ++  GFWDMYDPEGYSLWFCDYKYNDEN VSFVTLNKVGGFLQRMDLARKY+FGKMLI GSE PFKVKGLWLFRG EIP+FIMDE YDMELY+W KVDI+DEAQKERVSQMIED EPFEGEALLDAKCFK
Sbjct:  285 VAIKGFWDMYDPEGYSLWFCDYKYNDENMVSFVTLNKVGGFLQRMDLARKYSFGKMLICGSEGPFKVKGLWLFRGPEIPKFIMDEVYDMELYEWTKVDISDEAQKERVSQMIEDAEPFEGEALLDAKCFK 414          
BLAST of CX054035 vs. ExPASy Swiss-Prot
Match: EF1G3_ORYSJ (Elongation factor 1-gamma 3 OS=Oryza sativa subsp. japonica GN=Os06g0571400 PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.120e-64
Identity = 111/130 (85.38%), Postives = 121/130 (93.08%), Query Frame = -1
Query:  288 ISFVGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIPQFIMDECYDMELYDWKKVDINDEAQKERVSQMIEDHEPFEGEALLDAKCFK 677
            I+  GFWDMYDPEGYSLWFCDYKYNDENTVSFVT+NKVGGFLQRMDL RKYAFGKML+IGS PPFKVKGLWLFRGQ+IP+F+MDE YDMELY+W KVD++DEAQKERV+ MIED EPFEGE LLDAKCFK
Sbjct:  287 IAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSTPPFKVKGLWLFRGQDIPKFVMDEVYDMELYEWTKVDLSDEAQKERVNAMIEDQEPFEGEDLLDAKCFK 416          
BLAST of CX054035 vs. ExPASy Swiss-Prot
Match: EF1G_TRYCR (Elongation factor 1-gamma OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.456e-21
Identity = 50/125 (40.00%), Postives = 79/125 (63.20%), Query Frame = -1
Query:  288 FWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIPQFIMDECYDMELYDWKKVDINDEAQKERVSQMIEDHEPFEGEALLDAKCFK 662
            F+  YD  GY+ ++C YKYN++N + F+T N + G+ QRM+  RKYAFG  LIIG E    +  LW+FRG+ +P  I+++  D EL+DW++V  +  AQ+ER++  +    P     +L+ + FK
Sbjct:  289 FFQHYDAAGYTTFWCRYKYNEDNKMQFMTANLIRGWFQRMEHVRKYAFGVALIIGEERRHDIVALWVFRGRGMPA-IVEDVEDTELFDWEEV-ADVAAQRERITDYLSWEGPTIPRPVLEGRVFK 411          
BLAST of CX054035 vs. ExPASy Swiss-Prot
Match: EF1G_CARAU (Elongation factor 1-gamma OS=Carassius auratus GN=eef1g PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.433e-19
Identity = 45/125 (36.00%), Postives = 79/125 (63.20%), Query Frame = -1
Query:  315 LWISFVGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIPQFIMDECY--DMELYDWKKVDINDEAQKERVSQMIEDHEPFEGE 683
            L ++   FWD +D EG+S+W+ +Y++ +E T+SF++ N + G  QR+D  RK AF  +++ G+     + G+W+FRGQE+  F + E +  D E Y W+K+D++ E  K     M++++  +EGE
Sbjct:  308 LTVALPYFWDHFDREGFSIWYAEYRFPEELTMSFMSCNLITGMFQRLDKLRKNAFASVILFGANNDSCISGIWVFRGQEL-AFTLSEDWQIDYESYTWRKLDVDSEECK----TMVKEYFAWEGE 427          
BLAST of CX054035 vs. ExPASy Swiss-Prot
Match: EF1G_DANRE (Elongation factor 1-gamma OS=Danio rerio GN=eef1g PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.114e-19
Identity = 41/117 (35.04%), Postives = 75/117 (64.10%), Query Frame = -1
Query:  315 FWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIPQFIMDEC-YDMELYDWKKVDINDEAQKERVSQMIEDHEPFEGE 662
            FWD +D EG+S+W+ +Y++ +E T++F++ N + G  QR+D  RK AF  +++ G+     + G+W+FRGQ++   + D+   D E Y W+K+D++ E  K     M++++  +EGE
Sbjct:  315 FWDHFDREGFSIWYAEYRFPEELTMAFMSCNLITGMFQRLDKLRKNAFASVILFGANNDSCISGIWVFRGQDLAFPLSDDWQIDYESYTWRKLDVDSEECK----TMVKEYFAWEGE 427          
BLAST of CX054035 vs. ExPASy Swiss-Prot
Match: EF1G_DROME (Elongation factor 1-gamma OS=Drosophila melanogaster GN=Ef1gamma PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.531e-18
Identity = 42/106 (39.62%), Postives = 66/106 (62.26%), Query Frame = -1
Query:  348 FWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIPQFIM-DECYDMELYDWKKVDINDEAQKERVSQ 662
            F+D +D E YS+WF +YKYN+E +  F++ N + G  QR+D  RK AF  + + G +    + G+W++RGQ++   +  D   D E+YDWKK+D   E  K+ V+Q
Sbjct:  305 FFDKFDAENYSIWFGEYKYNEELSKVFMSCNLITGMFQRLDKMRKAAFASVCLFGEDGNSTISGIWVWRGQDLAFTLSPDWQIDYEVYDWKKLDAKSEETKKLVTQ 410          
The following BLAST results are available for this feature:
BLAST of CX054035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
EF1G_PRUAV2.041e-6686.92Elongation factor 1-gamma OS=Prunus avium PE=2 SV=... [more]
EF1G1_ORYSJ7.757e-6687.69Elongation factor 1-gamma 1 OS=Oryza sativa subsp.... [more]
EF1G2_ORYSJ1.728e-6586.92Elongation factor 1-gamma 2 OS=Oryza sativa subsp.... [more]
EF1G2_ARATH6.567e-6588.46Probable elongation factor 1-gamma 2 OS=Arabidopsi... [more]
EF1G1_ARATH6.567e-6588.46Probable elongation factor 1-gamma 1 OS=Arabidopsi... [more]
EF1G3_ORYSJ1.120e-6485.38Elongation factor 1-gamma 3 OS=Oryza sativa subsp.... [more]
EF1G_TRYCR4.456e-2140.00Elongation factor 1-gamma OS=Trypanosoma cruzi PE=... [more]
EF1G_CARAU1.433e-1936.00Elongation factor 1-gamma OS=Carassius auratus GN=... [more]
EF1G_DANRE7.114e-1935.04Elongation factor 1-gamma OS=Danio rerio GN=eef1g ... [more]
EF1G_DROME3.531e-1839.62Elongation factor 1-gamma OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_9H01_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-9H01-O2-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX054035 ID=CX054035; Name=CX054035; organism=Citrus sinensis; type=EST; length=875bp
ACGTAAACGAAAAAACTTATTGTTACGCACTGGATAAAACTGAAGCACCG
TAGATTTGCCCCTTGTAATCCCAACATTATTGACTTTAAACAAAAACATG
AATGTAATATGAAAATTAACTAGAAAGTTCTGATGTATTTAAATCAAAGT
CAATTGAATGCTTAAATAGGGTCAATTTGCTAACAGCACAAAACTAAAGA
TGAAAAATTAGAAAACTTAAATGATTGCAACAGCATTACACACACACACC
AGCTACTTCTCCGGTCTGGTCCGTCTGGATGATCTCACTTGAAGCACTTG
GCATCTAACAAGGCCTCACCCTCGAAAGGTTCATGATCTTCGATCATCTG
GCTTACACGCTCCTTCTGAGCTTCATCATTGATGTCCACCTTCTTCCAAT
CATACAACTCCATGTCGTAACACTCGTCCATTATAAATTGAGGAATCTCT
TGTCCACGGAAAAGCCACAAACCCTTTACCTTGAAAGGTGGCTCCGAGCC
AATAATCAGCATCTTCCCAAAAGCATACTTACGAGCCAAGTCCATTCGCT
GCAGGAATCCGCCCACTTTGTTCAAAGTCACAAATGAGACTGTATTCTCA
TCATTGTACTTGTAATCACAGAACCAAAGAGAGTAGCCCTCCGGATCATA
CATGTCCCAAAATCCTACAAAAGAAATCCACAGAAGAAATATCTTTTAGA
AAAGCTGACTATATGAACACCTGTATCCATCAAAGATTGTCCCTGGTCCA
TACATGCCCAAATTTTAATTTTATTTTTTATATGAAAATACATATTAATA
TTTACCACACATAGTGAAAATTTCACTTCTCGATAGATTAACATCTTCTG
CTGATAACAGTTAAAAAAAAAAAAA
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