DR403689

Overview
NameDR403689
Unique NameDR403689
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR403689_ssr660 microsatellite DR403689_ssr660:660..669. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2568 contig Csv1_Contig2568:137..876. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403689 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.548e-48
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 2
Query:  152 MARPLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 442
            MAR LFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97          
BLAST of DR403689 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.920e-22
Identity = 57/104 (54.81%), Postives = 70/104 (67.31%), Query Frame = 2
Query:  152 MARPLFKAKLLLAPVADGISLSISRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 439
            MAR +   KLL A + DG+ +SISRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID AELREMLLNH+VR+
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104          
BLAST of DR403689 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20
Identity = 54/104 (51.92%), Postives = 68/104 (65.38%), Query Frame = 2
Query:  152 MARPLFKAKLLLAPVADGISLSISRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 439
            MAR +   K L A V D + +SISRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID A+LREM+LNH+VR+
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104          
The following BLAST results are available for this feature:
BLAST of DR403689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI5.548e-4898.97Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI8.920e-2254.81Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI6.392e-2051.92Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241P12 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241P12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403689 ID=DR403689; Name=DR403689; organism=Citrus sinensis; type=EST; length=741bp
GGGGACAAGCACAGCACAAAGAGAGCGAGCCGCTAGCTTTTGCCTATAGC
TACTGCAGGAGCAGAATCTTTCTTCTTCTGTAGTAGCACTGTACAGAAAC
ATCCCAGCTAGCTATCTTCATATCTATTAAGTTCTATAAGTAAATAAAAC
AATGGCCCGCCCTCTCTTCAAAGCTAAGCTTCTTCTTGCTCCTGTTGCTG
ATGGCATCTCGCTCTCCATTAGCAGGAGAGGATATGCTGCAGCAGCACCC
TTGGGGACCATATCTCGGACTGGTATCATGGAGAAAAATGATTTGAGGCC
TGCGGTGAGAGAGGATTCTGGGGCCTCTTCTGCCTGGGCCCCAGATCCCA
TCACTGGGTACTACAGGCCGGAGAATCGGGCGGTCGAGATTGATCCAGCA
GAGCTTCGAGAGATGCTGTTGAACCACAAAGTCAGGGCACACTAGNGGAG
TGGTGGCGCATAGCAGCAGATCCTTTGCNNNTAGCGGTGCTTTAACGTTT
TAAGTGATGTTGTTACAGTAGCAATTTTGACTCACTCTTAAGTCTTTGCT
GTTGTATTGATATCAACTGTTATTGACAACTTTTAATAGTGCATTTCCAT
GATTTTGTCTATTAACTTGTCAATAAAAGTAAAGAATTCCTGTATTGCAA
AATTACTTTTATATATATANTATATAGAGGGGGTTATGCGGGTCTGGGAT
CCNNNNCTGTAATTAAAGTCCAGGATTGGGACCATGTGTAG
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