DR403684

Overview
NameDR403684
Unique NameDR403684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR403684_ssr267 microsatellite DR403684_ssr267:267..278. BLAST: Citrus ESTs to Prunus persica proteins V1
DR403684_ssr355 microsatellite DR403684_ssr355:355..366. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1336 contig Csv1_Contig1336:1201..1663. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403684 vs. ExPASy Swiss-Prot
Match: SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.585e-27
Identity = 49/61 (80.33%), Postives = 54/61 (88.52%), Query Frame = 1
Query:   22 IDXXGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 204
            ID  GAC ARCRLSSRP LC+RACGTCCARCNCVPPGT+GNTE CPCYA++TTH  +RKCP
Sbjct:   44 IDCGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104          
BLAST of DR403684 vs. ExPASy Swiss-Prot
Match: GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 2.048e-24
Identity = 46/61 (75.41%), Postives = 49/61 (80.33%), Query Frame = 1
Query:   22 IDXXGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 204
            ID   AC ARCRLS RP LCHRACGTCC RCNCVPPGT GN + C CYA++TTH GRRKCP
Sbjct:   38 IDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98          
BLAST of DR403684 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 9.513e-22
Identity = 42/61 (68.85%), Postives = 47/61 (77.05%), Query Frame = 1
Query:   22 IDXXGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 204
            ID  G C+ RC  SSRPNLC RAC +CC RCNCVPPGTAGN  +CPCYA++TT  GR KCP
Sbjct:   39 IDCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99          
BLAST of DR403684 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.242e-21
Identity = 41/61 (67.21%), Postives = 48/61 (78.69%), Query Frame = 1
Query:   22 IDXXGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 204
            ID  G C+ RC  SSR  LC RAC +CC+RCNCVPPGT+GNT +CPCYA++TTH GR KCP
Sbjct:   39 IDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99          
The following BLAST results are available for this feature:
BLAST of DR403684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SNAK2_SOLTU2.585e-2780.33Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1[more]
GASA1_ARATH2.048e-2475.41Gibberellin-regulated protein 1 OS=Arabidopsis tha... [more]
GASA3_ARATH9.513e-2268.85Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
GASA2_ARATH1.242e-2167.21Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241P05 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241P05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403684 ID=DR403684; Name=DR403684; organism=Citrus sinensis; type=EST; length=463bp
GGCCGGGATCCAAAACCATCAATTGACNNNNGAGGTGCATGCCAAGCCAG
GTGCCGATTATCGTCGAGGCCAAACCTGTGCCACAGGGCATGTGGTACCT
GCTGCGCCCGCTGCAATTGTGTTCCTCCAGGCACTGCAGGTAACACTGAG
GTCTGCCCTTGCTACGCCAATATGACCACCCACCACGGCAGACGCAAGTG
CCCTTGAAATATTTTAAGTTGAAACGACGTCGTCTACTTCTTAATTAATT
TTTTTGGAGCTTCTATTCTCTCTCTCTCTATGTATAAATATGTGCGTGTG
CGTGTGCGTGTGTTGCCTGTGGCCAGAAAAACAGAGTTGATCCATATTCC
CTTGAATAAATAAATAAATCCATTTCATGTTACTTATTGTGGATACATAA
GTTTCCAGAGAATAATAATAAGAGGCTTCTTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
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