DR403674

Overview
NameDR403674
Unique NameDR403674
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5994 contig Csv1_Contig5994:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403674 vs. ExPASy Swiss-Prot
Match: UBC20_ARATH (Ubiquitin carrier protein E2 20 OS=Arabidopsis thaliana GN=UBC20 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 7.549e-58
Identity = 111/160 (69.38%), Postives = 126/160 (78.75%), Query Frame = 1
Query:  166 AAASSKQPVSSPNTVDRTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 645
            A+  SKQP +   TVD  SV +RLQ ELM LMM GG  G+SAFPE ++IF W GTI G K T++EG  Y+LSL F  DYPFKPP+VKFET CFHPNVD YGNICLDILQDKWSSAYD RTILLSIQSLLGEPN  SPLN+ AA L +N+E+YRKMV+K Y
Sbjct:   17 ASNGSKQPAAPTKTVDSQSVLKRLQSELMGLMMGGGP-GISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNTQAAQLWSNQEEYRKMVEKLY 175          
BLAST of DR403674 vs. ExPASy Swiss-Prot
Match: UBC19_ARATH (Ubiquitin carrier protein E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 7.065e-56
Identity = 110/160 (68.75%), Postives = 123/160 (76.88%), Query Frame = 1
Query:  166 AAASSKQPVSSPNTVDRTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 645
            AA  SKQ      TVD  SV +RLQ ELM LMM G D G+SAFPE ++IF W GTI G K T++EG  Y+LSL F  DYPFK P+VKFET CFHPNVD YGNICLDILQDKWSSAYD RTILLSIQSLLGEPN  SPLN+ AA L +N+E+YRKMV+K Y
Sbjct:   18 AATGSKQSAPPTKTVDSHSVLKRLQSELMGLMM-GADPGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNNQAAQLWSNQEEYRKMVEKLY 176          
BLAST of DR403674 vs. ExPASy Swiss-Prot
Match: UBE2C_DICDI (Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.189e-52
Identity = 93/142 (65.49%), Postives = 120/142 (84.51%), Query Frame = 1
Query:  220 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 645
            SV++RLQ ELM+LMM G   G+SAFP+G++IF WIGTI+G K T+YE + +K+SL FP DYP+KPP VKFET CFHPNVD  GNICLDIL+DKWS  Y+ R++L+SIQSLLGEPN ESPLNSYAA+L +N+++Y+K++ K+Y
Sbjct:    6 SVSKRLQSELMNLMM-GPSPGISAFPDGDNIFNWIGTIQGAKDTVYEQMEFKMSLKFPTDYPYKPPTVKFETQCFHPNVDNNGNICLDILKDKWSPVYNVRSLLISIQSLLGEPNNESPLNSYAASLWSNQDEYKKVLDKRY 146          
BLAST of DR403674 vs. ExPASy Swiss-Prot
Match: UBE2C_XENLA (Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevis GN=ube2c PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.801e-51
Identity = 99/162 (61.11%), Postives = 123/162 (75.93%), Query Frame = 1
Query:  160 ATAAASSKQPVSSPNTVDRTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 645
            A ++ +S++   S  +  R SV +RLQ+ELM+LMMSG D G+SAFPE +++F WIGTI+G  GT+YE L YKLSL FP  YP+  P VKF T CFHPNVD +GNICLDIL+DKWS+ YD RTILLS+QSLLGEPN ESPLN YAA L  N+  Y+K + +QY
Sbjct:   10 AASSVASRKGQESGTSAARGSVGKRLQQELMTLMMSG-DKGISAFPESDNLFKWIGTIDGAVGTVYEDLRYKLSLEFPSGYPYNAPTVKFVTPCFHPNVDSHGNICLDILKDKWSALYDVRTILLSLQSLLGEPNNESPLNPYAAELWQNQTAYKKHLHEQY 170          
BLAST of DR403674 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.179e-48
Identity = 87/162 (53.70%), Postives = 125/162 (77.16%), Query Frame = 1
Query:  160 ATAAASSKQPVSSPNTVDRTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 645
            A      ++P     + +R SV++RLQ+EL +L+MSG D G++AFP+G+++F W+ T++G K T+YE L YKL+L FP DYP+KPP VKF T C+HPNVDQ GNICLDIL++ W+++YD RTILLS+QSLLGEPN  SPLN+ AA + +N+ +Y+K++ ++Y
Sbjct:   10 ANQVRQKERPRDMTTSKERHSVSKRLQQELRTLLMSG-DPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWSNQTEYKKVLHEKY 170          
BLAST of DR403674 vs. ExPASy Swiss-Prot
Match: UBE2C_MACFA (Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.422e-48
Identity = 93/162 (57.41%), Postives = 118/162 (72.84%), Query Frame = 1
Query:  160 ATAAASSKQPVSSPNTVDRTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 645
            AT+  ++++         R  V +RLQ+ELM+LMMSG D G+SAFPE +++F W+GTI G  GT+YE L YKLSL FP  YP+  P VKF T C+HPNVD  GNICLDIL+DKWS+ YD RTILLSIQSLLGEPN +SPLN++AA L  N   ++K +Q+ Y
Sbjct:   10 ATSVTAARKGAEPSGGAARGPVGKRLQQELMTLMMSG-DKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETY 170          
BLAST of DR403674 vs. ExPASy Swiss-Prot
Match: UBE2C_HUMAN (Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.422e-48
Identity = 93/162 (57.41%), Postives = 119/162 (73.46%), Query Frame = 1
Query:  160 ATAAASSKQPVSSPNTVDRTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 645
            AT+ A++++         R  V +RLQ+ELM+LMMSG D G+SAFPE +++F W+GTI G  GT+YE L YKLSL FP  YP+  P VKF T C+HPNVD  GNICLDIL++KWS+ YD RTILLSIQSLLGEPN +SPLN++AA L  N   ++K +Q+ Y
Sbjct:   10 ATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSG-DKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETY 170          
BLAST of DR403674 vs. ExPASy Swiss-Prot
Match: UBE2C_BOVIN (Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN=UBE2C PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 7.082e-48
Identity = 93/162 (57.41%), Postives = 118/162 (72.84%), Query Frame = 1
Query:  160 ATAAASSKQPVSSPNTVDRTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 645
            A + A++++         R  V +RLQ+ELM+LMMSG D G+SAFPE +++F W+GTI G  GT+YE L YKLSL FP  YP+  P VKF T C+HPNVD  GNICLDIL+DKWS+ YD RTILLSIQSLLGEPN +SPLN++AA L  N   ++K +Q+ Y
Sbjct:   10 AASVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSG-DKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETY 170          
BLAST of DR403674 vs. ExPASy Swiss-Prot
Match: UBE2C_MOUSE (Ubiquitin-conjugating enzyme E2 C OS=Mus musculus GN=Ube2c PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.975e-46
Identity = 92/162 (56.79%), Postives = 115/162 (70.99%), Query Frame = 1
Query:  160 ATAAASSKQPVSSPNTVDRTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 645
            A + A+ ++         R  V +RLQ+ELM LM SG D G+SAFPE +++F W+GTI G  GT+YE L YKLSL FP  YP+  P VKF T C+HPNVD  GNICLDIL+DKWS+ YD RTILLSIQSLLGEPN +SPLN++AA L  N   ++K +Q+ Y
Sbjct:   10 AASVAAVRKGAEPCGGAARGPVGKRLQQELMILMTSG-DKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETY 170          
BLAST of DR403674 vs. ExPASy Swiss-Prot
Match: UBE2C_DROME (Ubiquitin-conjugating enzyme E2 C OS=Drosophila melanogaster GN=vih PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.075e-46
Identity = 92/170 (54.12%), Postives = 118/170 (69.41%), Query Frame = 1
Query:  136 NPTVENLRATAAASSKQPVSSPNTVDRTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 645
            N + E         SK    S    D  +V++RL KELM+LMM+  + G+SAFP+GE+IF W+GTI G + T+Y G +Y+LSL FP  YP+  P VKF T CFHPNVD  G ICLDIL+DKWS+ YD RTILLSIQSLLGEPN ESPLN+ AA + N++++Y+K +   Y
Sbjct:    4 NISPEQSGGAGGGGSKHSDDSMPVKDNHAVSKRLHKELMNLMMAN-ERGISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVKFLTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPNNESPLNAQAAMMWNDQKEYKKYLDAFY 172          
The following BLAST results are available for this feature:
BLAST of DR403674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UBC20_ARATH7.549e-5869.38Ubiquitin carrier protein E2 20 OS=Arabidopsis tha... [more]
UBC19_ARATH7.065e-5668.75Ubiquitin carrier protein E2 19 OS=Arabidopsis tha... [more]
UBE2C_DICDI6.189e-5265.49Probable ubiquitin-conjugating enzyme E2 C OS=Dict... [more]
UBE2C_XENLA1.801e-5161.11Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevi... [more]
UBE2C_SPISO3.179e-4853.70Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]
UBE2C_MACFA5.422e-4857.41Ubiquitin-conjugating enzyme E2 C OS=Macaca fascic... [more]
UBE2C_HUMAN5.422e-4857.41Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens ... [more]
UBE2C_BOVIN7.082e-4857.41Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN... [more]
UBE2C_MOUSE2.975e-4656.79Ubiquitin-conjugating enzyme E2 C OS=Mus musculus ... [more]
UBE2C_DROME5.075e-4654.12Ubiquitin-conjugating enzyme E2 C OS=Drosophila me... [more]

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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241O17 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241O17 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403674 ID=DR403674; Name=DR403674; organism=Citrus sinensis; type=EST; length=730bp
CGCCGGGGGAAACCAAACAAAATTACAAAAANNNAANNNNGAATCATCTC
ATCGTCATCGTTAATCTTGATTATCGTCATTGATCATCGGCCGTTGATCA
GTGATTCTTCTTTGCTGATCATGGAGGTGCGGCCAAATCCGACGGTTGAA
AATTTACGTGCAACTGCCGCTGCTTCGTCGAAGCAGCCTGTCTCTTCTCC
TAACACCGTCGATAGAACATCCGTTACTCAAAGGCTTCAGAAGGAATTGA
TGTCTCTTATGATGAGTGGAGGTGATCTTGGGGTCTCGGCCTTTCCTGAA
GGCGAGAGCATTTTCACTTGGATTGGCACAATTGAGGGTGGAAAGGGAAC
TATGTATGAGGGTTTATCATACAAACTTTCTTTGCATTTTCCTCTGGATT
ATCCTTTCAAGCCACCCCAAGTCAAGTTTGAAACTATGTGCTTCCATCCA
AATGTCGATCAGTATGGCAACATATGCCTAGACATCCTTCAGGACAAGTG
GTCTTCAGCTTATGATTGCAGAACGATTCTTTTGTCCATTCAAAGTTTAT
TGGGAGAGCCTAATCCAGAGAGCCCTCTCAACAGCTATGCTGCAGCTCTG
TTGAACAATAAGGAAGATTACAGAAAAATGGTCCAGAAACAGTACTTTGC
TGGAGAATTTGAGAGCTAATTTGAACAGCAAAACAGATACAAAATCGGAT
GTTAGGCTTCCACATTATTTCTCTGTAAAG
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