DR403370

Overview
NameDR403370
Unique NameDR403370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7824 contig Csv1_Contig7824:30..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403370 vs. ExPASy Swiss-Prot
Match: NXN_MOUSE (Nucleoredoxin OS=Mus musculus GN=Nxn PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.079e-23
Identity = 54/132 (40.91%), Postives = 80/132 (60.61%), Query Frame = 1
Query:  232 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACVPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPF 627
            LL  +G  ++ S LEG    +YFSA+W PPC + T VLV+ Y +++  G +FE++FVS+D    +F  Y + +PWLAVPY+D   +  LNR + I+GIP L+VL P  +    T    VE++     R FP+
Sbjct:  178 LLRNNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQEFEIIFVSADRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEV--ITRQGRVEVLNDEDCREFPW 307          
BLAST of DR403370 vs. ExPASy Swiss-Prot
Match: NXN_BOVIN (Nucleoredoxin OS=Bos taurus GN=NXN PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.410e-23
Identity = 54/132 (40.91%), Postives = 80/132 (60.61%), Query Frame = 1
Query:  232 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACVPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPF 627
            LL  +G  ++ S LEG    +YFSA+W PPC + T VLV+ Y +++  G  FE++FVS+D   ++F  Y + +PWLAVPY+D   +  LNR + I+GIP L+VL P  +    T    VE++     R FP+
Sbjct:  178 LLRSNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEIIFVSADRSEDSFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEV--ITRQGRVEVLNDEDCRGFPW 307          
BLAST of DR403370 vs. ExPASy Swiss-Prot
Match: NXN_HUMAN (Nucleoredoxin OS=Homo sapiens GN=NXN PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.141e-23
Identity = 53/132 (40.15%), Postives = 80/132 (60.61%), Query Frame = 1
Query:  232 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACVPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPF 627
            LL  +G  ++ S LEG    +YFSA+W PPC + T VLV+ Y +++  G +FE++FVS+D    +F  Y + +PWLAVPY+D   +  LNR + I+GIP L++L P  +    T    VE++     R FP+
Sbjct:  178 LLRNNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQNFEIIFVSADRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIMLDPQGEV--ITRQGRVEVLNDEDCREFPW 307          
BLAST of DR403370 vs. ExPASy Swiss-Prot
Match: NXN_XENLA (Nucleoredoxin OS=Xenopus laevis GN=nxn PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.723e-21
Identity = 52/133 (39.10%), Postives = 77/133 (57.89%), Query Frame = 1
Query:  232 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACVPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG-VELIYKYGIRAFPF 627
            L+  +    + S LEG    +YFSA W PPC + T VLV+ Y +++ +G  FE+V VS+D    +F  Y + +PWLAVPYSD   +  LNR + I+GIP L++L P   K +     G VE++     + FP+
Sbjct:  157 LIRNNSQSQESSTLEGSYVGIYFSAYWCPPCRSLTRVLVESYRKIKESGQKFEIVLVSADRSEESFKQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPNLIILDP---KGEVITRQGRVEVLRDIDCKEFPW 286          
BLAST of DR403370 vs. ExPASy Swiss-Prot
Match: NXN_DANRE (Nucleoredoxin OS=Danio rerio GN=nxn PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.250e-20
Identity = 46/104 (44.23%), Postives = 65/104 (62.50%), Query Frame = 1
Query:  232 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACVPWLAVPYSDLETKKALNRKFDIEGIPCLVVL 543
            LL  +      + LEG    +YFSA+W PPC + T VLV+ Y +++  G  FE+VFVS+D    +F  Y + +PWLAVPYSD   +  LNR + I+GIP L++L
Sbjct:  161 LLRNNRQTTDSTALEGSYVGVYFSAHWCPPCRSLTRVLVESYRKVKETGQKFEIVFVSADRSEESFTQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPTLILL 264          
BLAST of DR403370 vs. ExPASy Swiss-Prot
Match: TYPX_TRYBB (Tryparedoxin OS=Trypanosoma brucei brucei PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.180e-16
Identity = 43/104 (41.35%), Postives = 64/104 (61.54%), Query Frame = 1
Query:  232 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACVPWLAVPYSDLETKKALNRKFDIEGIPCLVVL 543
            LL++ G +V +  L GK   LYFSA+W PPC  FT VL + YE+  +   +FEVV +S DE+ + F++Y   +PWLA+P+    T   L + F +E IP L+ +
Sbjct:   14 LLSKSG-EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEK-HHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITI 115          
The following BLAST results are available for this feature:
BLAST of DR403370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
NXN_MOUSE1.079e-2340.91Nucleoredoxin OS=Mus musculus GN=Nxn PE=1 SV=1[more]
NXN_BOVIN1.410e-2340.91Nucleoredoxin OS=Bos taurus GN=NXN PE=2 SV=1[more]
NXN_HUMAN3.141e-2340.15Nucleoredoxin OS=Homo sapiens GN=NXN PE=1 SV=2[more]
NXN_XENLA1.723e-2139.10Nucleoredoxin OS=Xenopus laevis GN=nxn PE=2 SV=1[more]
NXN_DANRE3.250e-2044.23Nucleoredoxin OS=Danio rerio GN=nxn PE=2 SV=1[more]
TYPX_TRYBB2.180e-1641.35Tryparedoxin OS=Trypanosoma brucei brucei PE=1 SV=... [more]
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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244M12 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244M12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403370 ID=DR403370; Name=DR403370; organism=Citrus sinensis; type=EST; length=681bp
GGGGACAGTGTTAATCTTTTTGTAATACATCGAGAGAGAAATTGGAAAAA
GAAAAAAAGAGAGAAAAAAATAAAATTAAAAAAAAAAAGGAGAGTGATGA
GAAATGAAGTGAGGTTGGAGGAAGACGAGGAGCAGCTGATGACGACAAAT
GGAAGCTCTATCTCTGAGCATCAGAAGATCTCAACCTCATCAAGATTTTC
AAGCCTCTTGGCCTCTAAAGATCGTGACTATCTTCTCAATCAACATGGCA
CTCAGGTGAAAGTCTCTGATCTTGAAGGCAAGGTCACAGCCCTTTACTTC
TCAGCTAACTGGTATCCGCCGTGTGGAAACTTCACCGGAGTTCTTGTTGA
CGTTTACGAAGAGCTGAGGAACAATGGATCCGATTTTGAGGTTGTCTTTG
TGTCATCTGATGAAGACTTGAATGCCTTCAACAACTACCGTGCATGCGTG
CCATGGCTAGCAGTTCCATATTCGGATTTGGAAACAAAGAAGGCCTTGAA
CCGAAAATTTGACATCGAAGGCATTCCTTGCTTGGTTGTGTTGCAACCTT
ATGATGATAAAGATGATGCAACATTGCATGATGGAGTTGAGCTCATTTAC
AAGTATGGGATCAGAGCTTTCCCATTTACTAAAGAGAAGCTTGAGGAATT
GCTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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