DR403307

Overview
NameDR403307
Unique NameDR403307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403307 vs. ExPASy Swiss-Prot
Match: FB204_ARATH (F-box protein At3g56470 OS=Arabidopsis thaliana GN=At3g56470 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.501e-52
Identity = 92/204 (45.10%), Postives = 136/204 (66.67%), Query Frame = 1
Query:   94 TKMVTEGKEERLELHDWSELPAELLELIMCHLTLEDNVHASVVCKKWHAPAISVRVVNQSPWLMYFPKFGNLYEFYDPAQRKTYSLELPELYGSRVCYTKDSWLLLYRPRTHRVFFFNPFTRDMIKLPRFELTY-QIVAFSCAPTSSSCVVFTVKHISPTVVAISTCHPGATEWVTDNYQNRLPFVSSIWNKLVFCNGIFYCLS 702
            TK   +  +E+ +   +  LP +LL+L++  L L+DN+ AS VCK WH   +S+RV++ SPWL+YF K  + YE YDP+ +K  +L  PEL G RVCY+KD WLL+Y P ++++ FFNPFTRD + +P   + Y Q +AFSCAPTS+SC++FTV  ++   + I T    A EW T  ++NRL    + + ++VF NG+FYCL+
Sbjct:   13 TKRKKQSSKEKEKYQTFINLPCDLLQLVISRLPLKDNIRASAVCKTWHEACVSLRVIHTSPWLIYFSKTDDSYELYDPSMQKNCNLHFPELSGFRVCYSKDGWLLMYNPNSYQLLFFNPFTRDCVPMPTLWMAYDQRMAFSCAPTSTSCLLFTVTSVTWNYITIKTYFANAKEWKTSVFKNRLQRNFNTFEQIVFSNGVFYCLT 216          
BLAST of DR403307 vs. ExPASy Swiss-Prot
Match: FBK23_ARATH (F-box/kelch-repeat protein At1g57790 OS=Arabidopsis thaliana GN=At1g57790 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.359e-47
Identity = 94/190 (49.47%), Postives = 124/190 (65.26%), Query Frame = 1
Query:  142 WSELPAELLELIMCHLTLEDNVHASVVCKKWHAPAISVRVVNQSPWLMYFPKFGNLYEFYDPAQRKTYSLELPE-LYGSRVCYTKDSWLLLYRPRTHRVFFFNPFTRDMIKLPRFEL--TYQIVAFSCAPTSSSCVVFTVKHISPTVVAISTCHPGATEWVTDNYQNRLPFVSSIWNKLVFCNGIFYCLS 702
            W +LP ELL  +M  L ++DNV ASVVCK W   A+SVRV+++SPWLMYFP+  N Y+FYDP+  K Y++ELP+ L G  V Y+KD WLL+ +  +     FNPFT D++ LP   L   YQ+V FS APTSS CVVFT+K   P  V I T  PG T W +   +++  F+    N +VF NG+FYCL+
Sbjct:   13 WKDLPLELLSSVMTFLEIKDNVRASVVCKSWFEAAVSVRVIDKSPWLMYFPETKNTYDFYDPSNCKKYTMELPKSLVGFIVRYSKDGWLLMSQEDSSHFVLFNPFTMDVVALPFLHLFTYYQLVGFSSAPTSSECVVFTIKDYDPGHVTIRTWSPGQTMWTSMQVESQ--FLDVDHNNVVFSNGVFYCLN 200          
BLAST of DR403307 vs. ExPASy Swiss-Prot
Match: FB217_ARATH (F-box protein At4g00893 OS=Arabidopsis thaliana GN=At4g00893 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.694e-47
Identity = 91/191 (47.64%), Postives = 130/191 (68.06%), Query Frame = 1
Query:  142 WSELPAELLELIMCHLTLEDNVHASVVCKKWHAPAISVRVVNQSPWLMYFPKFGNLYEFYDPAQRKTYSLELPELYGSRVCYTKDSWLLLYRPRTHRVFFFNPFTRDMIKLPRFELTYQIVAFSCAPTSSSCVVFTVKHISPTV--VAISTCHPGATEWVTDNYQN--RLPFVSSIWNKLVFCNGIFYCLS 702
            +++LP+ L+E IM  L L+DN+ AS  CK W+   +SVRVV++ PWLM FPK GNL+EF DP   K ++L+LPEL  S VCY++  WLL+ +  ++ VFFFNPF+RD+I LP  EL +Q +AFSC PTS  CV+  +K +   V  V +STC+PGAT+W+T+++    RL ++ S    LV+    FYC +
Sbjct:   45 FADLPSSLIEEIMLLLVLKDNIRASAACKSWYEAGVSVRVVDKHPWLMCFPKRGNLFEFRDPLHWKLHTLDLPELAESTVCYSRFGWLLMRKASSNDVFFFNPFSRDIISLPMCELDFQQIAFSCPPTSDDCVLLAIKFVPGEVNRVTVSTCNPGATKWITNDFPTFLRLFYMQS---NLVYRRDRFYCFN 232          
BLAST of DR403307 vs. ExPASy Swiss-Prot
Match: FB232_ARATH (Putative F-box protein At4g12382 OS=Arabidopsis thaliana GN=At4g12382 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.100e-33
Identity = 63/125 (50.40%), Postives = 89/125 (71.20%), Query Frame = 1
Query:  142 WSELPAELLELIMCHLTLEDNVHASVVCKKWHAPAISVRVVNQSPWLMYFPKFGNLYEFYDPAQRKTYSLELPELYGSRVCYTKDSWLLLYRPRTHRVFFFNPFTRDMIKLPRFELTYQIVAFSC 516
            +++LP+ L+E+IM HL L++N+ AS  CK W+   +SVRVV + PWL+ FPK GNL+EF DP   K Y+L LPEL  S VCY++  WLL+ +  +  VFFFNPF+RD+I LP+ EL ++ + F C
Sbjct:   10 FADLPSSLIEVIMSHLALKNNIRASAACKSWYEVGVSVRVVEKHPWLICFPKRGNLFEFRDPLHWKLYTLGLPELAESTVCYSRFGWLLMRKATSKDVFFFNPFSRDIISLPKCELAFEHITFYC 134          
BLAST of DR403307 vs. ExPASy Swiss-Prot
Match: FB49_ARATH (F-box protein At1g49360 OS=Arabidopsis thaliana GN=At1g49360 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.679e-33
Identity = 80/195 (41.03%), Postives = 117/195 (60.00%), Query Frame = 1
Query:  151 LPAELLELIMCHLTLEDNVHASVVCKKWHAPAISVRVVNQSPWLMYFPKF---GNLYEFYDPAQ-RKTYSLELPEL-YGSRVCYTKDSWLLLYRPRT--HRVFFFNPFTRDMIKLPR---FELTYQIVAFSCAPTSSSCVVFTVKHISPTV-VAISTCHPGATEWVTDNYQNRLPFVSSIWNKLVFCNGIFYCLS 702
            LP++L+ LI+  L+ +DN+ +S VCK W   A SVRV ++  WL+Y   F   G  Y F+DP + +KT  + LPEL   S + Y+KD WLL+    +    ++FFNPFTR+ I LPR    E  +   AFSCAPT  SC+VF + +IS +V + IST  PGAT W+ +++ N  P        +++ +G+FY  S
Sbjct:  111 LPSDLVRLILSRLSFKDNIRSSTVCKAWGDIAASVRVKSRRCWLLYHDAFQDKGVSYGFFDPVEKKKTKEMNLPELSKSSGILYSKDGWLLMNDSLSLIADMYFFNPFTRERIDLPRNRIMESVHTNFAFSCAPTKKSCLVFGINNISSSVAIKISTWRPGATTWLHEDFPNLFPSYFRRLGNILYSDGLFYTAS 305          
BLAST of DR403307 vs. ExPASy Swiss-Prot
Match: FBK62_ARATH (F-box/kelch-repeat protein At3g18720 OS=Arabidopsis thaliana GN=At3g18720 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.720e-31
Identity = 76/197 (38.58%), Postives = 112/197 (56.85%), Query Frame = 1
Query:  148 ELPAELLELIMCHLTLEDNVHASVVCKKWHAPAISVRVVNQSPWLMY------FPKFGNLYEFYDPAQRKTYSLELPEL--YGSRVCYTKDSWLLLYRPRTHRVFFFNPFTRDMIKLPRF--ELTYQIVAFSCAPTSSSCVV--FTVKHISPTVVAISTCHPGATEWVTDNYQNRLPFVSSIWNKLVFCNGIFYCLS 702
            ++P +LL+ I+  L L+ N+HAS+VCK W   A+SVR     PWL Y       PK G+ Y  ++P++ +T+ L+ PEL  Y +++   KD WLL+ +     VFF NPFT + I LP+     T   + FS APTS+SC V  FT +     VV + T  PG + W T ++  +      + N+ +F NG+FYCLS
Sbjct:   51 QIPTDLLQEILSRLGLKANIHASLVCKTWLKEAVSVRKFQSRPWLFYPQSQRGGPKEGD-YVLFNPSRSQTHHLKFPELTGYRNKLACAKDGWLLVVKDNPDVVFFLNPFTGERICLPQVPQNSTRDCLTFSAAPTSTSCCVISFTPQSFLYAVVKVDTWRPGESVWTTHHFDQKR--YGEVINRCIFSNGMFYCLS 244          
The following BLAST results are available for this feature:
BLAST of DR403307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
FB204_ARATH4.501e-5245.10F-box protein At3g56470 OS=Arabidopsis thaliana GN... [more]
FBK23_ARATH4.359e-4749.47F-box/kelch-repeat protein At1g57790 OS=Arabidopsi... [more]
FB217_ARATH5.694e-4747.64F-box protein At4g00893 OS=Arabidopsis thaliana GN... [more]
FB232_ARATH2.100e-3350.40Putative F-box protein At4g12382 OS=Arabidopsis th... [more]
FB49_ARATH4.679e-3341.03F-box protein At1g49360 OS=Arabidopsis thaliana GN... [more]
FBK62_ARATH5.720e-3138.58F-box/kelch-repeat protein At3g18720 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244I14 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244I14 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403307 ID=DR403307; Name=DR403307; organism=Citrus sinensis; type=EST; length=707bp
GGGGACAGAATTTTTGCTTCAATTGATACTCTCATCATGGCTGGCAAAAA
GAGACGAAAATTGAAACTTTTAGCTGAAACAGAAACAGATGGTACCAAAA
TGGTAACTGAGGGTAAGGAAGAAAGATTGGAGCTGCATGATTGGTCCGAG
CTTCCTGCAGAACTTTTGGAGCTGATAATGTGCCACCTAACATTAGAGGA
TAATGTTCATGCCTCAGTTGTATGCAAAAAGTGGCATGCCCCTGCCATTT
CTGTCCGGGTGGTAAACCAATCTCCATGGCTCATGTACTTCCCCAAATTT
GGCAACCTATACGAGTTCTATGACCCTGCACAGCGCAAGACATATTCCCT
CGAGTTACCAGAATTGTATGGGTCTAGGGTTTGCTACACTAAAGATAGTT
GGTTATTGCTATACAGACCCAGAACCCATCGTGTGTTCTTCTTTAATCCC
TTCACTAGGGATATGATCAAACTGCCAAGATTCGAGTTGACCTATCAGAT
CGTGGCCTTCTCATGTGCCCCAACATCTTCCAGTTGTGTAGTTTTCACAG
TGAAGCACATCAGTCCCACAGTTGTTGCTATAAGCACTTGTCATCCAGGG
GCAACAGAATGGGTTACTGATAATTACCAAAATCGGTTGCCTTTTGTGAG
TAGTATTTGGAATAAGCTTGTTTTCTGCAATGGTATATTTTACTGTCTAA
GTCTCAC
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