DR403299

Overview
NameDR403299
Unique NameDR403299
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length446
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR403299_ssr343 microsatellite DR403299_ssr343:343..372. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1856 contig Csv1_Contig1856:1022..1467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DR403299 vs. ExPASy Swiss-Prot
Match: GOX2_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 OS=Arabidopsis thaliana GN=At3g14420 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.662e-25
Identity = 56/67 (83.58%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:    4 GASGVFAGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWDTPGAVARL 204
            GASG+F GRPV FSLA +GEAGVRKVLQMLRDEFELTMALSGCRSLKEI+RNHI T WDTP   ARL
Sbjct:  301 GASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDTPRPSARL 367
[Close]
BLAST of DR403299 vs. ExPASy Swiss-Prot
Match: GOX1_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 OS=Arabidopsis thaliana GN=At3g14415 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 8.248e-25
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:    4 GASGVFAGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWDTPGAVARL 204
            GASG+F GRPV F+LA +GEAGV+KVLQMLRDEFELTMALSGCRSL EITRNHIVT WDTP  + RL
Sbjct:  301 GASGIFIGRPVVFALAAEGEAGVKKVLQMLRDEFELTMALSGCRSLSEITRNHIVTEWDTPRHLPRL 367
[Close]
BLAST of DR403299 vs. ExPASy Swiss-Prot
Match: GOX_SPIOL (Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.317e-22
Identity = 53/69 (76.81%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    4 GASGVFAGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWDTPG--AVARL 204
            GA+GVF GRPV FSLA +GEAGV+KVLQM+RDEFELTMALSGCRSLKEI+R+HI   WD P   AVARL
Sbjct:  301 GAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWDGPSSRAVARL 369
The following BLAST results are available for this feature:
BLAST of DR403299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GOX2_ARATH1.662e-2583.58Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 ... [more]
GOX1_ARATH8.248e-2580.60Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 ... [more]
GOX_SPIOL1.317e-2276.81Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia... [more]
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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244I05 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244I05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403299 ID=DR403299; Name=DR403299; organism=Citrus sinensis; type=EST; length=446bp
GGGGGAGCATCTGGAGTATTTGCTGGAAGGCCAGTACCATTCTCGCTGGC
AGTTGATGGAGAGGCTGGTGTGAGAAAAGTGCTTCAGATGCTTCGTGATG
AGTTTGAGCTAACAATGGCATTAAGTGGGTGCCGTTCGCTCAAGGAGATT
ACACGCAACCACATTGTGACTCATTGGGACACTCCAGGAGCTGTAGCCAG
ATTGTAAGATGGTCTCCAACATCAACATTAAAACTTTTCATTTTTAAACA
ACTGTGATTCGAATAACCTAATCCCGGATTCAGGGATTAGGATATTGTTA
AGACGACAAGGATGTATGAATTAATTAAATAAAGGGAGGTGCGGCTTGGC
TTGGCTTGGCTTGGCTTGGCTTGGGGCTTTTTATGTAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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