DR403267

Overview
NameDR403267
Unique NameDR403267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1895 contig Csv1_Contig1895:190..889. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DR403267 vs. ExPASy Swiss-Prot
Match: ZFP1_WHEAT (Zinc finger protein 1 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.890e-27
Identity = 89/238 (37.39%), Postives = 103/238 (43.28%), Query Frame = -2 
Query:   72 WTKRKRSKRPHNPPTEEEYLALCLVMLARGXXXXXXXXXXXXXXXXSQRQKXXXXXXXXXXXXSDQKLVFKCSVCDKAFSSYQALGGHKASHR--KGSGGGDEHXXXXXXXXXXXXXXTGV-----------PNATGRTHECSICHKSFPTGQALGGHKRCHYDGG-----------EKXXXXXXXXXXXXXXXXHRDFDLNLPVLPEL------SPAFFFSGDDEVESPLPAKKPRL 695
            W KRKRS+R  +   EEE LALCL+ML+RG                 QR +            ++    FKCSVC K+FSSYQALGGHK SHR  + S   D                                AT R H CSIC K FPTGQALGGHKR HYDGG                              R FDLN+P +PE            +  D+EV+SPL  KKPRL
Sbjct:   43 WAKRKRSRRQRS---EEENLALCLLMLSRGGK---------------QRVQAPQPESFAAPVPAE----FKCSVCGKSFSSYQALGGHKTSHRVKQPSPPSDAAAAPLVALPAVAAILPSAEPATSSTAASSDGATNRVHRCSICQKEFPTGQALGGHKRKHYDGGVGAAASSTELLAAAAAESEVGSTGNGSSAARAFDLNIPAVPEFVWRPCAKGKMMWEDDEEVQSPLAFKKPRL 258
The following BLAST results are available for this feature:
BLAST of DR403267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ZFP1_WHEAT2.890e-2737.39Zinc finger protein 1 OS=Triticum aestivum PE=2 SV... [more]
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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244G07 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403267 ID=DR403267; Name=DR403267; organism=Citrus sinensis; type=EST; length=702bp
GCCGGGGGAGCCCAAAAACAAAAAAATAGTGGCAATTANNNNANNNNAAC
TTCGATTTTGGGGGGNNNGAAGAGACGCGGCTTCTTCGCCGGCAGTGGAC
TCTCCACCTCGTCATCACCAGAGAAGAAGAAAGCAGGGGAGAGCTCCGGT
AAGACAGGGAGGTTGAGGTCAAAGTCACGGTGGCTGACTTGGCTGTGAGT
GCTACTGGACCCGGATGACGTCACTCCGCTCTTCTCGCCGCCATCGTAGT
GACAACGTTTGTGTCCGCCCAAGGCTTGGCCGGTGGGGAAGGACTTGTGA
CAGATGGAACACTCGTGGGTCCTACCAGTGGCGTTCGGTACGCCGGTGGT
CGTGGCGGTTGCGTTGGTGTTGGTGGTAGTGGAAGCGGAGTGTTCGTCGC
CGCCCCCAGATCCCTTACGGTGGCTGGCCTTGTGACCACCCAAGGCTTGG
TAAGAAGAAAACGCCTTGTCGCACACGCTGCACTTGAAGACAAGCTTCTG
GTCAGAGGACGACGTCGTTGCAGCAGTAGATGGAGCAGGAGACTTCTGTC
GCTGTGAGGCGGTGGTGGTCGTGTTGCAGTTAGTTAAGGCGGCGGTGGAG
GTTGTGCCACGTGCAAGCATGACGAGGCAGAGCGCGAGATACTCTTCTTC
AGTTGGAGGATTGTGTGGACGCTTTGAGCGCTTGCGTTTGGTCCATGGCT
CA
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