DR403259

Overview
NameDR403259
Unique NameDR403259
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11062 contig Csv1_Contig11062:316..1021. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR403259 vs. ExPASy Swiss-Prot
Match: FTRV_MAIZE (Ferredoxin-thioredoxin reductase, variable chain OS=Zea mays PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23
Identity = 47/80 (58.75%), Postives = 65/80 (81.25%), Query Frame = 2 
Query:  326 KIGAKVKVKVPLKVYHVPRVPEHDLSGMEGVLKQYVGVWKGKKISANMPYKVAFVTEIEG--RPVKFFAHLKEDEFDYLD 559
            KIG +V+V  PL+VYHV + P+ D+ GMEGV+KQYV VWKGK+++AN P+KV F   +EG  +PV+FFAHL+EDEF+++D
Sbjct:   17 KIGRRVRVTAPLRVYHVLKAPDLDIQGMEGVVKQYVCVWKGKRVTANFPFKVEFELAVEGQPKPVRFFAHLREDEFEFVD 96
[Close]
BLAST of DR403259 vs. ExPASy Swiss-Prot
Match: FTRV_SPIOL (Ferredoxin-thioredoxin reductase, variable chain, chloroplastic OS=Spinacia oleracea GN=FTRV PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.311e-19
Identity = 54/115 (46.96%), Postives = 71/115 (61.74%), Query Frame = 2 
Query:  218 ISCEVAVKSNNSTASVGLEXXXXXXXXXXDDGFDESKIGAKVKVKVPLKVYHVPRVPEHDLS-GMEGVLKQYVGVWKGKKISANMPYKVAFVTEIEGR-PVKFFAHLKEDEFDYL 556
            I CEVA+KS++ST                    +  K+G KVKVK PLKVYHVP++PE +L+  M GV+KQYVG WKGK IS N P+KV +  ++  R  VK   HLKE+EF+ +
Sbjct:   60 ICCEVALKSDSSTGFDSSSSSPPEEDEELKKNLE--KVGCKVKVKSPLKVYHVPKLPEVELTPDMVGVIKQYVGFWKGKYISPNYPFKVEYRIDVPDRGSVKLVVHLKEEEFEII 172
The following BLAST results are available for this feature:
BLAST of DR403259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FTRV_MAIZE9.699e-2358.75Ferredoxin-thioredoxin reductase, variable chain O... [more]
FTRV_SPIOL1.311e-1946.96Ferredoxin-thioredoxin reductase, variable chain, ... [more]
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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244F20 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244F20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403259 ID=DR403259; Name=DR403259; organism=Citrus sinensis; type=EST; length=704bp
GCCGGGGGAATATCATTATTATTATATGATTATTNNNTGANNNNTAGCAG
ACGAGTGAAAAGATAGATACACAGAAATCATGACTAGTACAAGTTTTGCT
TTGTTCTCGGCTACTTCTTCGTTGATAAATCGACGGCCACTTACGAATGC
GTTTGTCTCAGTTTCTTCATTTTCAGCTGCCAATTGTAGTGACAATGTTA
ATGTTAACAAAAGAAGAATCTCCTGTGAAGTAGCTGTAAAATCCAACAAT
TCAACGGCATCCGTAGGACTAGAGAGCAGTCCATCTTCATCAGCATCAGC
GTCGGATGATGGCTTTGATGAGTCTAAGATTGGTGCGAAGGTTAAGGTGA
AGGTGCCGCTGAAGGTTTACCATGTTCCTAGGGTTCCGGAGCATGATCTG
TCTGGCATGGAAGGTGTGCTCAAGCAATACGTCGGCGTTTGGAAAGGAAA
GAAAATCTCAGCCAATATGCCTTATAAGGTAGCGTTTGTTACTGAAATTG
AAGGCCGTCCTGTCAAGTTCTTTGCACATCTCAAGGAAGACGAGTTTGAT
TACCTTGATTAATATTTTTAAATTTTTATTATTTTGAACATGTTATTCCT
TCTCTTTCCTATCTCCATCCTCTACAAATAATATTTTTAGTCTTTGTATG
TAACTCTTCACATGAGATTATGCTTCTTAGTGTTTTTATTGTTATACTTT
CTCT
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