DR403229

Overview
NameDR403229
Unique NameDR403229
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6076 contig Csv1_Contig6076:1..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403229 vs. ExPASy Swiss-Prot
Match: MYG1_MOUSE (UPF0160 protein MYG1, mitochondrial OS=Mus musculus GN=Myg1 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.861e-44
Identity = 89/198 (44.95%), Postives = 124/198 (62.63%), Query Frame = 3
Query:  162 RVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKXXXXXXXXXXXXXXYDPSNDRYDHHQKGFEEVF-----GHGFSTKLSSAGLVYKHFGKELVAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERESEAFQQGMDLAGKEFLDTVRFYVRSW 740
            R+GTHNG+FHCDEAL C ++RL  ++ NA+IVR+RDP+              Y+P + RYDHHQ+ F E       G  + TKLSSAGLVY HFG++L+A+ L   E    V  ++  +Y+NF+E +DA+DNGI+Q+  +  PRY   T LS+RV +LN  W +P+Q  E     F++ MDL  +EFL  + FY  SW
Sbjct:   45 RIGTHNGTFHCDEALACALLRLLPEYANAEIVRTRDPEKLASCDIVVDVGGEYNPQSHRYDHHQRTFTETMSSLCPGKPWQTKLSSAGLVYLHFGRKLLAQLLGTSEEDSVVDTIYDKMYENFVEEVDAVDNGISQW-AEGEPRYAMTTTLSARVARLNPTWNQPNQDTE---AGFRRAMDLVQEEFLQRLNFYQHSW 238          
BLAST of DR403229 vs. ExPASy Swiss-Prot
Match: MYG1_RAT (UPF0160 protein MYG1, mitochondrial OS=Rattus norvegicus GN=Myg1 PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.348e-44
Identity = 90/198 (45.45%), Postives = 122/198 (61.62%), Query Frame = 3
Query:  162 RVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKXXXXXXXXXXXXXXYDPSNDRYDHHQKGFEEVF-----GHGFSTKLSSAGLVYKHFGKELVAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERESEAFQQGMDLAGKEFLDTVRFYVRSW 740
            R+GTHNG+FHCDEAL C ++RL  ++ NA+IVR+RDP+              Y+P   RYDHHQ+ F E       G  + TKLSSAGLVY HFG +L+A+ L   E    V  ++  +Y+NF+E +DA+DNGI+Q+  +  PRY   T LS+RV +LN  W +PDQ  E     F++ MDL  +EFL  + FY  SW
Sbjct:   46 RIGTHNGTFHCDEALACALLRLLPEYRNAEIVRTRDPEKLALCDIVVDVGGEYNPQRHRYDHHQRTFTETMSSLCPGKPWQTKLSSAGLVYLHFGHKLLAQLLGTSEEDSVVDTIYDKMYENFVEEVDAVDNGISQW-AEGEPRYALTTTLSARVSRLNPTWNQPDQDTE---AGFRRAMDLVQEEFLQRLNFYQHSW 239          
BLAST of DR403229 vs. ExPASy Swiss-Prot
Match: MYG1_BOVIN (UPF0160 protein MYG1, mitochondrial OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.847e-43
Identity = 89/198 (44.95%), Postives = 123/198 (62.12%), Query Frame = 3
Query:  162 RVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKXXXXXXXXXXXXXXYDPSNDRYDHHQKGFEEVF-----GHGFSTKLSSAGLVYKHFGKELVAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERESEAFQQGMDLAGKEFLDTVRFYVRSW 740
            R+GTHNG+FHCDEAL C ++RL  ++  A+IVR+RDP+              YDP   RYDHHQ+ F E       G  + TKLSSAGL+Y HFG +L+A+ L   E    V  L+  +Y+NF+E +DA+DNGI+Q++ +  PRY+  T LS+RV +LN  W +P+Q  E     F++ MDL  +EFL  + FY  SW
Sbjct:   46 RIGTHNGTFHCDEALACALLRLLPEYREAEIVRTRDPEKLAACDIVVDVGGEYDPQRHRYDHHQRSFTETMSSLSPGKPWQTKLSSAGLIYLHFGHKLLAQLLGTSEEDGMVGTLYDKMYENFVEEVDAVDNGISQWE-EGEPRYLLTTTLSARVARLNPTWNQPNQDTE---AGFKRAMDLVREEFLQRLDFYQNSW 239          
BLAST of DR403229 vs. ExPASy Swiss-Prot
Match: MYG1_HUMAN (UPF0160 protein MYG1, mitochondrial OS=Homo sapiens GN=C12orf10 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.412e-43
Identity = 90/198 (45.45%), Postives = 121/198 (61.11%), Query Frame = 3
Query:  162 RVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKXXXXXXXXXXXXXXYDPSNDRYDHHQKGFEEVF-----GHGFSTKLSSAGLVYKHFGKELVAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERESEAFQQGMDLAGKEFLDTVRFYVRSW 740
            R+GTHNG+FHCDEAL C ++RL  ++ +A+IVR+RDP+              YDP   RYDHHQ+ F E       G  + TKLSSAGL+Y HFG +L+A+ L   E    V  L+  +Y+NF+E +DA+DNGI+Q+  +  PRY   T LS+RV +LN  W  PDQ  E     F++ MDL  +EFL  + FY  SW
Sbjct:   46 RIGTHNGTFHCDEALACALLRLLPEYRDAEIVRTRDPEKLASCDIVVDVGGEYDPRRHRYDHHQRSFTETMSSLSPGKPWQTKLSSAGLIYLHFGHKLLAQLLGPSEEDSMVGTLYDKMYENFVEEVDAVDNGISQW-AEGEPRYALTTTLSARVARLNPTWNHPDQDTE---AGFKRAMDLVQEEFLQRLDFYQHSW 239          
BLAST of DR403229 vs. ExPASy Swiss-Prot
Match: YK4P_CAEEL (UPF0160 protein C27H6.8 OS=Caenorhabditis elegans GN=C27H6.8 PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 5.205e-38
Identity = 81/196 (41.33%), Postives = 114/196 (58.16%), Query Frame = 3
Query:  165 VGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKXXXXXXXXXXXXXXYDPSNDRYDHHQKGFEEVFGH----GFSTKLSSAGLVYKHFGKELVAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERESEAFQQGMDLAGKEFLDTVRFYVRSW 740
            +GTH+G FHCDEA  CFM++   +F +  I+R+RD                +D S  RYDHHQ+GF +         F TKLSSAGLVY H+G+E++ + L  +     +   +  +Y+ F+E+IDAIDNGI+QY  D  PRY ++ NLSSR G+ N  W EP+  A+   E FQQ M   G+EF  +V++    W
Sbjct:    5 IGTHSGKFHCDEAFACFMLKQLPQFKDHSILRTRDAAQLEKCDIIVDVGGIFDHSKQRYDHHQRGFTDTMRTLEKLNFDTKLSSAGLVYAHYGREVINQILGGNVSSSMIDLFYHRLYEQFVESIDAIDNGISQY--DGVPRYHSSGNLSSRTGQFNSHWNEPENDAD---ERFQQAMQFIGEEFSRSVKYLANVW 195          
BLAST of DR403229 vs. ExPASy Swiss-Prot
Match: U160_DICDI (UPF0160 protein OS=Dictyostelium discoideum GN=DDB_G0267768 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.583e-37
Identity = 72/190 (37.89%), Postives = 119/190 (62.63%), Query Frame = 3
Query:  171 THNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKXXXXXXXXXXXXXXYDPSNDRYDHHQKGFEEVFGHGFSTKLSSAGLVYKHFGKELVAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERESEAFQQGMDLAGKEFLDTVRFYVRSW 740
            TH+GSFH DEAL C++++L   + +++I+RSRD                Y+    R+DHHQ GF E F      KLSSAGL+YKH+GK+++ + L+ ++   ++  L+  +Y + ++ +D +DNG+ +Y +D  PRY + +++S+RVG LN  W EP Q  E  ++ F++ M+L G+ FLD + +Y +SW
Sbjct:    8 THSGSFHADEALACYLLKLLPTYKDSKIIRSRDKSVIEKSTVAVDVGAVYNFEKLRFDHHQSGFTETFDDKHDIKLSSAGLIYKHYGKDIIKQRLDTNDSITEL--LYQKLYDSMIQELDGVDNGVERYPSDIKPRYQSGSSISARVGHLNQGWNEP-QDDEIVNKQFEKAMELMGQYFLDRLDYYGKSW 194          
BLAST of DR403229 vs. ExPASy Swiss-Prot
Match: YIW4_SCHPO (UPF0160 protein C694.04c OS=Schizosaccharomyces pombe GN=SPAC694.04c PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.042e-33
Identity = 77/198 (38.89%), Postives = 109/198 (55.05%), Query Frame = 3
Query:  156 LKRVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKXXXXXXXXXXXXXXYDPSNDRYDHHQKGFEEVFGHGFSTKLSSAGLVYKHFGKEL---VAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERESEAFQQGMDLAGKEFLDTVRFYVRSW 740
            L ++ TH+G+FH DEAL  +M+R  D+F  AQIVRSRDP+              YD     +DHHQ+ F + F   +ST+LSSAGL+YKHFG+E+   V  +L ++E   D+  L+  VY++F+E +DA DNGI+ Y     P +    +L   V      W    Q  +   E FQ+  DL G  F+ +V  Y  SW
Sbjct:    4 LVKIATHSGTFHADEALAVYMLRRLDRFSGAQIVRSRDPQVLDSCDIIVDVGGKYDGIK-YFDHHQREFNDTFSPKYSTRLSSAGLIYKHFGREVIHAVLPQLKINE--QDLETLYEKVYQSFVEGLDANDNGISAYPAGLKPSFKAAMSLPEMVSSFLPAWNSEKQDDQTYLECFQKASDLMGTWFVRSVEHYALSW 198          
BLAST of DR403229 vs. ExPASy Swiss-Prot
Match: YEY6_YEAST (UPF0160 protein YER156C OS=Saccharomyces cerevisiae GN=YER156C PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.502e-32
Identity = 76/199 (38.19%), Postives = 116/199 (58.29%), Query Frame = 3
Query:  159 KRVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKXXXXXXXXXXXXXXYDPSNDRYDHHQKGFEEVFGHGFSTKLSSAGLVYKHFGKELVAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQY----DTDKPPRYVNNT-NLSSRVGKLNLDWTEPDQSAERESEAFQQGMDLAGKEFLDTVRFYVRSW 740
            K++ TH+GSFH DE+L  +M+RL  +F +A++VRSR+PK              YD     +DHHQ+GF E F   + TKLSSAGL++KH+G++++   LN      D+  L+  VYK F+EA+DA DNGI++Y    D++  P + +N  ++   +  +N +W E D S E     F +  +  G  F+  VR Y +SW
Sbjct:   15 KQICTHSGSFHADESLAVYMLRLLPEFKDAKLVRSRNPKDWEASDILVDVGAQYDGVKF-FDHHQRGFFETFNEKYKTKLSSAGLIFKHYGRDIIKTILNNKVSSSDLDLLYDKVYKQFVEALDANDNGISKYTIPKDSNLEPNFRDNAISIPGIISGMNPNWNE-DTSDESFDRCFARASEFIGGVFVTLVRGYGQSW 211          
The following BLAST results are available for this feature:
BLAST of DR403229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
MYG1_MOUSE4.861e-4444.95UPF0160 protein MYG1, mitochondrial OS=Mus musculu... [more]
MYG1_RAT6.348e-4445.45UPF0160 protein MYG1, mitochondrial OS=Rattus norv... [more]
MYG1_BOVIN1.847e-4344.95UPF0160 protein MYG1, mitochondrial OS=Bos taurus ... [more]
MYG1_HUMAN2.412e-4345.45UPF0160 protein MYG1, mitochondrial OS=Homo sapien... [more]
YK4P_CAEEL5.205e-3841.33UPF0160 protein C27H6.8 OS=Caenorhabditis elegans ... [more]
U160_DICDI2.583e-3737.89UPF0160 protein OS=Dictyostelium discoideum GN=DDB... [more]
YIW4_SCHPO5.042e-3338.89UPF0160 protein C694.04c OS=Schizosaccharomyces po... [more]
YEY6_YEAST2.502e-3238.19UPF0160 protein YER156C OS=Saccharomyces cerevisia... [more]
back to top
Properties
Property NameValue
Genbank descriptionCSAF-PNP1244E05 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403229 ID=DR403229; Name=DR403229; organism=Citrus sinensis; type=EST; length=742bp
GGGGGTCCCTGGCAAGCGCAACCAAAGGGTTTAACCAGAAGCTCTTCTTC
TTCAGCGTGCACAAAAACCTCTTCAATCGCCCTGTCATAGCCATGGCAGG
CACCGGTGTTTCTTCTTCTCCTGCTTACTCCACTTCATCCCCCAGCCAAA
CCCCTCTCAAGCGCGTGGGCACCCACAACGGCAGCTTCCACTGCGACGAG
GCGCTTGGTTGCTTCATGATTCGCCTCACTGACAAGTTCTTCAACGCCCA
GATAGTCCGCTCCCGCGACCCCAAGGTGTTGGATGATCTTGATGCGGTGC
TTGATGTTGGAGGTGTGTATGATCCCAGTAATGATCGTTATGATCATCAC
CAGAAAGGTTTTGAAGAGGTTTTTGGACACGGGTTCTCTACGAAACTTAG
TAGTGCCGGTCTTGTTTATAAGCATTTTGGAAAGGAGTTAGTAGCCAAGG
AACTTAATGTTGATGAAGGGCATCCAGACGTGCATCGATTATTTTTGGCT
GTTTACAAGAACTTCATGGAGGCAATCGATGCTATTGATAACGGAATCAA
TCAGTATGACACAGACAAGCCTCCAAGATATGTGAATAATACAAATTTGT
CTTCTAGGGTGGGGAAACTAAATTTGGATTGGACGGAACCTGATCAGTCA
GCGGAGAGGGAGAGTGAAGCCTTCCAACAAGGAATGGATCTGGCTGGCAA
AGAGTTTCTGGACACTGTTCGATTTTATGTTAGATCGTGGTT
back to top