DR403221

Overview
NameDR403221
Unique NameDR403221
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5742 contig Csv1_Contig5742:1..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403221 vs. ExPASy Swiss-Prot
Match: RFS5_ARATH (Probable galactinol--sucrose galactosyltransferase 5 OS=Arabidopsis thaliana GN=RFS5 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 8.538e-55
Identity = 94/159 (59.12%), Postives = 122/159 (76.73%), Query Frame = 2
Query:   83 VTAKTNPXXIEWNSGKNPISIEGVQVFAMYLQEAKKLVISKPYENIEISLEPFSFELITVSPVTLLPGGTSPSVQFAPIGLVNMLNTGGAIQSLSYDDDENSVEIGVKGSGEMRVFASEKPRACKIDGNEVAFEYEGHMVAIQVPWSSPSGLSVIEYLF 559
            +TA T+P  +EWNSG +PISI  V+ FA++L ++KKL++S   +++E++LEPF FELITVSPV  + G    SV+FAPIGLVNMLNT GAI+SL Y+D+  SVE+GV G+GE RV+AS+KP +C IDG  V F YE  MV +QVPWS P GLS I+YLF
Sbjct:  630 LTATTSPKDVEWNSGSSPISIANVEEFALFLSQSKKLLLSGLNDDLELTLEPFKFELITVSPVVTIEGN---SVRFAPIGLVNMLNTSGAIRSLVYNDE--SVEVGVFGAGEFRVYASKKPVSCLIDGEVVEFGYEDSMVMVQVPWSGPDGLSSIQYLF 783          

HSP 2 Score: 48.9062 bits (115), Expect = 8.538e-55
Identity = 20/34 (58.82%), Postives = 22/34 (64.71%), Query Frame = 1
Query:    4 GAFNCQGGGWCREARRNTCASQLFTKGDSQDQPK 105
            GAFNCQGGGWCRE RRN C S+      +   PK
Sbjct:  604 GAFNCQGGGWCRETRRNQCFSECVNTLTATTSPK 637          
BLAST of DR403221 vs. ExPASy Swiss-Prot
Match: RFS_PEA (Galactinol--sucrose galactosyltransferase OS=Pisum sativum GN=RFS PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.480e-50
Identity = 88/163 (53.99%), Postives = 117/163 (71.78%), Query Frame = 2
Query:   71 YSQKVTAKTNPXXIEWNSGKNPISIEGVQVFAMYLQEAKKLVISKPYENIEISLEPFSFELITVSPVTLLPGGTSPSVQFAPIGLVNMLNTGGAIQSLSYDDDENSVEIGVKGSGEMRVFASEKPRACKIDGNEVAFEYEGHMVAIQVPWSSPSGLSVIEYLF 559
            +S  VT   +P  IEW +GK P+ I+GV VFA+Y  + KKL + K  + +E+SLEPFSFEL+TVSP+ +    +   +QFAPIGLVNMLN+GGA+QSL +DD  + V+IGV+G GE+ VFASEKP  CKIDG  V F+YE  MV +Q+ W   S LS++E+LF
Sbjct:  639 FSHAVTCYASPEDIEWCNGKTPMDIKGVDVFAVYFFKEKKLSLMKCSDRLEVSLEPFSFELMTVSPLKVF---SKRLIQFAPIGLVNMLNSGGAVQSLEFDDSASLVKIGVRGCGELSVFASEKPVCCKIDGVSVEFDYEDKMVRVQILWPGSSTLSLVEFLF 798          

HSP 2 Score: 41.5874 bits (96), Expect = 4.480e-50
Identity = 16/22 (72.73%), Postives = 17/22 (77.27%), Query Frame = 1
Query:    4 GAFNCQGGGWCREARRNTCASQ 69
            G FNCQGGGWC E RRN  AS+
Sbjct:  617 GLFNCQGGGWCPETRRNKSASE 638          
BLAST of DR403221 vs. ExPASy Swiss-Prot
Match: RFS_ORYSJ (Galactinol--sucrose galactosyltransferase OS=Oryza sativa subsp. japonica GN=RFS PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 5.728e-37
Identity = 69/168 (41.07%), Postives = 106/168 (63.10%), Query Frame = 2
Query:   71 YSQKVTAKTNPXXIEWNSGKNPISIEGVQVFAMYLQEAKKLVISKPYENIEISLEPFSFELITVSPVTLLPGGTSPS--VQFAPIGLVNMLNTGGAIQSL--SYDDDENSVEIGVKGSGEMRVFASEKPRACKIDGNEVAFEYEGHMVAIQVPWS-SPSGLSVIEYLF 559
            +S  VTA+ +P  +EW+ G       G   FA+Y  EA+KL + +  E++E++LEPF++EL+ V+PV  +    SP   + FAPIGL NMLN GGA+Q    +  D + + E+ VKG+GEM  ++S +PR CK++G +  F+YE  +V + VPW+ S   LS +EY +
Sbjct:  624 FSVPVTARASPADVEWSHGGG-----GGDRFAVYFVEARKLQLLRRDESVELTLEPFTYELLVVAPVRAI---VSPELGIGFAPIGLANMLNAGGAVQGFEAARKDGDVAAEVAVKGAGEMVAYSSARPRLCKVNGQDAEFKYEDGIVTVDVPWTGSSKKLSRVEYFY 783          

HSP 2 Score: 45.8246 bits (107), Expect = 5.728e-37
Identity = 18/21 (85.71%), Postives = 19/21 (90.48%), Query Frame = 1
Query:    4 GAFNCQGGGWCREARRNTCAS 66
            GAFNCQGGGW REARRN CA+
Sbjct:  602 GAFNCQGGGWSREARRNMCAA 622          
BLAST of DR403221 vs. ExPASy Swiss-Prot
Match: STSYN_PEA (Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.650e-20
Identity = 53/153 (34.64%), Postives = 88/153 (57.52%), Query Frame = 2
Query:  110 IEWNSGKNPISIEGVQVFAMYLQEAKKL-VISKPYENIEISLEPFSFELITVSPVTLLPGGTSPSVQFAPIGLVNMLNTGGAIQSLSYDDDENSVEIGVKGSGEMRVFASEKPRACKIDGNEVAFEYEGH-MVAIQVPW-SSPSGLSVIEYLF 559
            +EW+  +    +   + + +YL +A++L +++   E I+ +++P +FEL +  PVT L GG    ++FAPIGL NM N+GG +  L Y    N  +I VKG G    ++SE P+  +++G EV FE+ G   + + VPW     G+S +E  F
Sbjct:  707 VEWDQKEETSHLGKAEEYVVYLNQAEELSLMTLKSEPIQFTIQPSTFELYSFVPVTKLCGG----IKFAPIGLTNMFNSGGTVIDLEYVG--NGAKIKVKGGGSFLAYSSESPKKFQLNGCEVDFEWLGDGKLCVNVPWIEEACGVSDMEIFF 853          

HSP 2 Score: 27.335 bits (59), Expect = 8.650e-20
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 1
Query:    4 GAFNCQGGGW 33
            GAFNCQG GW
Sbjct:  672 GAFNCQGAGW 681          
BLAST of DR403221 vs. ExPASy Swiss-Prot
Match: RFS6_ARATH (Probable galactinol--sucrose galactosyltransferase 6 OS=Arabidopsis thaliana GN=RFS6 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.199e-18
Identity = 45/109 (41.28%), Postives = 70/109 (64.22%), Query Frame = 2
Query:  164 AMYLQEAKKLVISKPYENIEISLEPFSFELITVSPVTLLPGGTSPSVQFAPIGLVNMLNTGGAIQSLSYDDDENSVEIGVKGSGEMRVFASEKPRACKIDGNEVAFEYE 490
            A+Y Q   +L++     ++ +SL+    E+ TVSP++ L  G S    FAPIGLVNM N+GGAI+ L Y+ ++  V + VKG G+   ++S KP+ C ++ NE+AFEY+
Sbjct:  618 AVYSQSRGELIVMPYNVSLPVSLKIREHEIFTVSPISHLVDGVS----FAPIGLVNMYNSGGAIEGLRYEAEKMKVVMEVKGCGKFGSYSSVKPKRCVVESNEIAFEYD 722          

HSP 2 Score: 25.7942 bits (55), Expect = 1.199e-18
Identity = 8/17 (47.06%), Postives = 10/17 (58.82%), Query Frame = 1
Query:    4 GAFNCQGGGWCREARRN 54
            G +NCQG  W    R+N
Sbjct:  565 GVYNCQGAAWSSTERKN 581          
BLAST of DR403221 vs. ExPASy Swiss-Prot
Match: RFS4_ARATH (Probable galactinol--sucrose galactosyltransferase 4 OS=Arabidopsis thaliana GN=RFS4 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.747e-15
Identity = 60/198 (30.30%), Postives = 101/198 (51.01%), Query Frame = 2
Query:    2 GGHLTAKEEAGAGKPDATHVPHNYSQ---KVTAKTNPXXIEWNSGKNPISIEGVQV-----FAMYLQEAKKLV-ISKPYENIEISLEPFSFELITVSPVTLLPGGTSPSVQFAPIGLVNMLNTGGAIQSLSYDDDENSVEIGVKGSGEMRVFASEKPRACKIDGNEVAFEYEGH--MVAIQVPWSSPS-GLSVIEYLF 559
            GG +      GAG     H    Y +    V+   +   IEW+  +NP    G QV     + +Y Q++++++ ++   E ++I+LEP +F+L++  PVT L    S  V+F P+GL+NM N  G +Q +    D NS+ + VKG G    ++S  P  C ++  E  F++E     ++  VPW   S G+S + + F
Sbjct:  686 GGVIGTFNCQGAGWSPEEHRFKGYKECYTTVSGTVHVSDIEWD--QNP-EAAGSQVTYTGDYLVYKQQSEEILFMNSKSEAMKITLEPSAFDLLSFVPVTEL---VSSGVRFVPLGLINMFNCVGTVQDMKVTGD-NSIRVDVKGEGRFMAYSSSAPVKCYLNDKEAEFKWEEETGKLSFFVPWVEESGGISHLSFTF 876          
The following BLAST results are available for this feature:
BLAST of DR403221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RFS5_ARATH8.538e-5559.12Probable galactinol--sucrose galactosyltransferase... [more]
RFS_PEA4.480e-5053.99Galactinol--sucrose galactosyltransferase OS=Pisum... [more]
RFS_ORYSJ5.728e-3741.07Galactinol--sucrose galactosyltransferase OS=Oryza... [more]
STSYN_PEA8.650e-2034.64Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 S... [more]
RFS6_ARATH1.199e-1841.28Probable galactinol--sucrose galactosyltransferase... [more]
RFS4_ARATH5.747e-1530.30Probable galactinol--sucrose galactosyltransferase... [more]
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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244D20 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244D20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403221 ID=DR403221; Name=DR403221; organism=Citrus sinensis; type=EST; length=707bp
GGGGGGGCATTTAACTGCCAAGGAGGAGGCTGGTGCAGGGAAGCCCGACG
CAACACATGTGCCTCACAATTATTCACAAAAGGTGACAGCCAAGACCAAC
CCAAANNACATTGAATGGAACAGTGGCAAGAACCCAATTTCCATTGAAGG
GGTTCAAGTCTTTGCCATGTACTTGCAAGAAGCCAAGAAGCTCGTTATCT
CCAAGCCATATGAAAACATTGAGATATCATTGGAGCCATTCAGTTTTGAG
CTCATCACTGTGTCTCCTGTGACTCTGCTGCCTGGAGGAACATCGCCATC
CGTGCAGTTTGCTCCCATTGGCCTGGTGAACATGCTCAACACCGGCGGCG
CAATCCAGTCTTTGTCCTACGATGATGATGAGAATTCAGTGGAAATTGGA
GTGAAGGGAAGTGGTGAAATGAGAGTCTTTGCTTCTGAGAAACCAAGAGC
TTGCAAGATTGATGGAAACGAAGTTGCATTTGAGTATGAAGGCCACATGG
TTGCTATTCAAGTGCCGTGGTCTAGCCCTTCTGGTTTATCTGTAATTGAG
TACTTATTTTAGAGCTAGATCAGGCTATATCAATGAGAGTCCGTTATCTA
TATATTGCGCATTTTGATGCCAAATTATGAGCAAGTTTAACTAAGTGTAT
TCAAGTACAATAAAAGTACAGTAAGATTTATTAGAAAAAAAAAAAAAAAA
AAAAAAA
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