DR403209

Overview
NameDR403209
Unique NameDR403209
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR403209_ssr253 microsatellite DR403209_ssr253:253..267. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9675 contig Csv1_Contig9675:5..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403209 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.687e-41
Identity = 94/167 (56.29%), Postives = 114/167 (68.26%), Query Frame = 3
Query:  162 RSGANQLSSVK--YLPSLRRNVNLSVRCTAXXXXXXXXXXXX-PTIPKAE---PQPP--KKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESESDGFMTSDAELWNREVCYAGPCCFXF 638
            RS  NQ +++   Y+P+LRRNV+L VR  A             PT P A    PQP   + P+MST FS++ AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL++ASL+P F+GVSVES+S   M+SDAE WN  +   G     F
Sbjct:   20 RSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAF 186          
BLAST of DR403209 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.228e-25
Identity = 58/115 (50.43%), Postives = 76/115 (66.09%), Query Frame = 3
Query:  282 PTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTSVLLTVASLVPLFKGVSVESESDGFMTSDAELWNREVCYAG 620
            PT   A P+P  K + +    +  AFSGPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T+ + +VASL+PL +G SVES+S G  ++DAELWN      G
Sbjct:  100 PTTIPAAPKPVTK-KANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLG 213          

HSP 2 Score: 29.261 bits (64), Expect = 1.228e-25
Identity = 14/23 (60.87%), Postives = 15/23 (65.22%), Query Frame = 1
Query:  601 GRFAMLDLVAXXFTEFVKGGTLV 669
            GRFAML LVA   TEF+ G   V
Sbjct:  207 GRFAMLGLVALAATEFITGAPFV 229          
BLAST of DR403209 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.239e-25
Identity = 73/188 (38.83%), Postives = 106/188 (56.38%), Query Frame = 3
Query:   93 MAASLATQSMLASPVAARVTGIRRSGANQLSSVKY---LPSLRRNVNLSVRCTAXXXXXXXXXXXXP--TIPKAEPQPPKKPRMSTGFS-EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESESDGFMTSDAELWNREVCYAGPCCFXF 638
            MA+S    ++ A     + T I R G N L   K    LP +RRN   +VR                  T        P +  ++T  + ++F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E++++GF  SDAE+WN      G     F
Sbjct:    1 MASSTCYATIPAMSCRGQST-ITRFGPNNLFLGKQSYELPLMRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAF 187          
BLAST of DR403209 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.099e-25
Identity = 72/173 (41.62%), Postives = 94/173 (54.34%), Query Frame = 3
Query:  105 LATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAXXXXXXXXXXXXPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESESDGFMTSDAELWNREVCYAG 620
            +AT   ++S   A V  + RS A+   + + LP+L R   L VR               P+ P     PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E  +   M ++AELWN      G
Sbjct:    1 MATMMSMSSFAGAAV--VPRSSASSFGA-RSLPALGRRA-LVVRAQTEG----------PSAP-----PPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLG 154          

HSP 2 Score: 26.5646 bits (57), Expect = 2.099e-25
Identity = 12/23 (52.17%), Postives = 14/23 (60.87%), Query Frame = 1
Query:  601 GRFAMLDLVAXXFTEFVKGGTLV 669
            GRFAML LVA   TE + G   +
Sbjct:  148 GRFAMLGLVALAATEIITGAPFI 170          
BLAST of DR403209 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.632e-25
Identity = 55/105 (52.38%), Postives = 68/105 (64.76%), Query Frame = 3
Query:  309 PPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESESDGFMTSDAELWNREVCYAG 620
            PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E  +   M ++AELWN      G
Sbjct:   45 PPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIG 149          

HSP 2 Score: 25.0238 bits (53), Expect = 4.632e-25
Identity = 11/19 (57.89%), Postives = 13/19 (68.42%), Query Frame = 1
Query:  601 GRFAMLDLVAXXFTEFVKG 657
            GRFAM+ LVA   TE + G
Sbjct:  143 GRFAMIGLVALAATEIITG 161          
BLAST of DR403209 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.166e-13
Identity = 51/114 (44.74%), Postives = 62/114 (54.39%), Query Frame = 3
Query:  285 TIPKAEPQPPKKPRMSTG--FSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESESDGFMTSDAELWNREVCYAG 620
            T P + P PP  P        +EV  FSG APE INGRLAM+GFVAALG E+S G+ V  QL D      L T VL + ASL+P F     + ++ G  T DAE+ N      G
Sbjct:   47 TPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF--ARRKGDAMGPFTPDAEMTNGRFAMIG 156          
The following BLAST results are available for this feature:
BLAST of DR403209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA4.687e-4156.29Early light-induced protein, chloroplastic OS=Pisu... [more]
ELI5_HORVU1.228e-2550.43High molecular mass early light-inducible protein ... [more]
DS22_CRAPL1.239e-2538.83Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI9_HORVU2.099e-2541.62Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU4.632e-2552.38Low molecular mass early light-inducible protein H... [more]
CBR_DUNBA3.166e-1344.74Carotene biosynthesis-related protein CBR, chlorop... [more]
back to top
Properties
Property NameValue
Genbank descriptionCSAF-PNP1244C22 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244C22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403209 ID=DR403209; Name=DR403209; organism=Citrus sinensis; type=EST; length=713bp
GGGGCAAGAAATTGCAAACAAGGAACCCGCCGACCTGAAGTACCCAATTC
CCGAATTATACTTTGTTCTGTTTTCTACTTCATAAATTAAAAATGGCCGC
ATCACTTGCTACTCAATCTATGCTGGCAAGTCCTGTAGCAGCTCGTGTGA
CTGGTATCAGGAGATCCGGGGCAAACCAACTTTCCTCCGTCAAGTACTTG
CCTAGTCTGCGTAGAAATGTCAACTTATCCGTGCGCTGCACGGCAGAGGA
TGAGCAGCAGCAGCAGCAGAAAGATGATCAACCAACCATACCGAAAGCTG
AGCCTCAGCCACCAAAGAAGCCGCGGATGAGCACGGGGTTCTCTGAGGTG
TTTGCGTTCAGCGGGCCGGCACCGGAGAGGATAAACGGGAGGCTTGCGAT
GATTGGGTTCGTGGCTGCATTGGGGGTGGAGATATCCAAGGGTCAGGATG
TGTTTGCCCAGTTATCAGACGGTGGGGTTGCCTGGTTCTTGGGGACCAGT
GTTTTGCTCACGGTTGCGTCCCTGGTTCCTTTGTTTAAAGGTGTCAGCGT
GGAGTCTGAATCGGATGGGTTCATGACTTCGGATGCTGAGTTGTGGAATC
GGGAGGTTTGCTATGCTGGACCTTGTTGCTTTNNNTTTCACCGAGTTTGT
TAAGGGTGGCACCCTTGTTTAAGCTTAATTTTGTTTAGATCTGTAGATCT
GTATTTNNTTTAA
back to top