DR403199

Overview
NameDR403199
Unique NameDR403199
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length580
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR403199_ssr48 microsatellite DR403199_ssr48:48..62. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2614 contig Csv1_Contig2614:82..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403199 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.571e-22
Identity = 44/65 (67.69%), Postives = 53/65 (81.54%), Query Frame = 1
Query:  130 SDTRGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 324
            SDT GNCDCAD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:    2 SDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of DR403199 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.430e-17
Identity = 40/69 (57.97%), Postives = 49/69 (71.01%), Query Frame = 1
Query:  121 STCSDTRGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCGS 327
            STC    GNCDC D+SQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:    2 STC----GNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of DR403199 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.270e-17
Identity = 42/64 (65.62%), Postives = 47/64 (73.44%), Query Frame = 1
Query:  130 SDTRGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTC 321
            SD  GNCDCAD SQCVKKG+S   D VETD S++  VV M V AAE+ G CKCG +C CVNCTC
Sbjct:    2 SDKCGNCDCADSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of DR403199 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.133e-14
Identity = 38/67 (56.72%), Postives = 45/67 (67.16%), Query Frame = 1
Query:  121 STCSDTRGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTC 321
            S CS    NCDC+D SQC KKG S+    VET+   + TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:    3 SKCS----NCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of DR403199 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.480e-14
Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 1
Query:  145 NCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 324
            NCDCAD +QCVKKG+SY    VET+   + TV V D  AAE +G CKCG  C+CV+CTCG
Sbjct:    7 NCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of DR403199 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.593e-14
Identity = 34/65 (52.31%), Postives = 41/65 (63.08%), Query Frame = 1
Query:  130 SDTRGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 324
            SD  GNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    2 SDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of DR403199 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.593e-14
Identity = 34/65 (52.31%), Postives = 41/65 (63.08%), Query Frame = 1
Query:  130 SDTRGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 324
            SD  GNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    2 SDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of DR403199 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.979e-12
Identity = 31/65 (47.69%), Postives = 39/65 (60.00%), Query Frame = 1
Query:  130 SDTRGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 324
            SD  GNCDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    2 SDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of DR403199 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.412e-11
Identity = 30/65 (46.15%), Postives = 39/65 (60.00%), Query Frame = 1
Query:  130 SDTRGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 324
            SD  G+CDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    2 SDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of DR403199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA9.571e-2267.69Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC1.430e-1757.97Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE9.270e-1765.63Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV1.133e-1456.72Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO1.480e-1460.00Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ9.593e-1452.31Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI9.593e-1452.31Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ8.979e-1247.69Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI3.412e-1146.15Metallothionein-like protein 3B OS=Oryza sativa su... [more]
back to top
Properties
Property NameValue
Genbank descriptionCSAF-PNP1244C07 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244C07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403199 ID=DR403199; Name=DR403199; organism=Citrus sinensis; type=EST; length=580bp
TTGTGTTGGTCCCGGGAATCGGCCATTACGGCCGGGGATATCATCACAGC
AAAGCAAAGCAAGTTTCGTACAATAAAGAGCCCTCTATTTCCAGTTTTAA
ATTCCAAGTTCTAAGCTCAATCAACATGCTCGGACACCCGCGGCAACTGC
GACTGCGCTGACAGGAGCCAGTGTGTGAAGAAGGGAAGCAGCTATGCTGC
TGACTTCGTCGAGACTGACTTGAGCTTTGTCAGCACCGTTGTTGTCATGG
ACGTTCAGGCTGCTGAGACTGAAGGTAACTGCAAGTGCGGCCCCACCTGC
GCTTGTGTGAACTGCACTTGTGGTAGTCACTAATAAGCAAACACATGCAG
CAAAAAATAAGAAGCTGCAAGTGTGCCTAAATATTGTGGGGGTTAAGAAT
AATGTAAGGGTGATTAAAAAAAAAGAAAAATTCTCTACTTCGTTTTTATG
ATGGTCTACTACTAGTGTGTGGAGTGATGTGCGTGTTGTGTCACCCATCA
CTCGTAATGTTTTGTGTTTCCTTCTTCATAATCATGTAATATATAGGCNN
NGGCCATGACCGTGGCCTTGTGTGGTTTAA
back to top