DR403177

Overview
NameDR403177
Unique NameDR403177
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6071 contig Csv1_Contig6071:1..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS143_ARATH (40S ribosomal protein S14-3 OS=Arabidopsis thaliana GN=RPS14C PE=2 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 3.213e-60
Identity = 117/139 (84.17%), Postives = 124/139 (89.21%), Query Frame = 3
Query:   72 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 488
            MS+RKT+EPK ENVTLGPAVR+GE VFGV H+FASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRA            AQSALRALARSGMKIGRIEDVTPIPTDST
Sbjct:    1 MSKRKTKEPKVENVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS141_MAIZE (40S ribosomal protein S14 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.480e-60
Identity = 121/139 (87.05%), Postives = 124/139 (89.21%), Query Frame = 3
Query:   72 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 488
            MSRRKTREPKEENV LGP VR+GE VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTP+PTDST
Sbjct:    1 MSRRKTREPKEENV-LGPTVREGEFVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDST 138          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS142_MAIZE (40S ribosomal protein S14 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 9.348e-60
Identity = 119/137 (86.86%), Postives = 124/137 (90.51%), Query Frame = 3
Query:   78 RRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 488
            R+KTREPKEENV LGPAVR+GEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLA+QDV+QRCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTP+PTDST
Sbjct:    4 RKKTREPKEENV-LGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDST 139          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS142_ARATH (40S ribosomal protein S14-2 OS=Arabidopsis thaliana GN=RPS14B PE=1 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.720e-59
Identity = 116/139 (83.45%), Postives = 123/139 (88.49%), Query Frame = 3
Query:   72 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 488
            MS+RKT+EPK E VTLGP+VR+GE VFGV HIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRA            AQSALRALARSGMKIGRIEDVTPIPTDST
Sbjct:    1 MSKRKTKEPKVETVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS14_LUPLU (40S ribosomal protein S14 OS=Lupinus luteus GN=RPS14 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.033e-58
Identity = 118/139 (84.89%), Postives = 121/139 (87.05%), Query Frame = 3
Query:   72 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 488
            MSRRK R+ KEE VTLGPAV DGEHVFGVA IFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+ RCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTPIP+DST
Sbjct:    1 MSRRKVRDTKEETVTLGPAVSDGEHVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVATRCKELGITALHIKLRATGGNKTKTPGRGAQSALRALARSGMKIGRIEDVTPIPSDST 139          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS141_ARATH (40S ribosomal protein S14-1 OS=Arabidopsis thaliana GN=RPS14A PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.350e-58
Identity = 115/139 (82.73%), Postives = 123/139 (88.49%), Query Frame = 3
Query:   72 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 488
            MS+RKT+EPK + VTLGP+VR+GE VFGV HIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRA            AQSALRALARSGMKIGRIEDVTPIPTDST
Sbjct:    1 MSKRKTKEPKVDVVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS14_CHLRE (40S ribosomal protein S14 OS=Chlamydomonas reinhardtii GN=RPS14 PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 7.665e-54
Identity = 107/135 (79.26%), Postives = 116/135 (85.93%), Query Frame = 3
Query:   84 KTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 488
            K  E  +E V+LGP VR+GEHVFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVKADRDESSPYAAMLAAQDV+Q+CKELGITALHIKLRA            AQSALRALAR+GMKIGRIEDVTPIPTDST
Sbjct:    8 KGDEAPKEVVSLGPTVREGEHVFGVAHIFASFNDTFVHVTDLSGRETISRVTGGMKVKADRDESSPYAAMLAAQDVAQKCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDST 142          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS14_MOUSE (40S ribosomal protein S14 OS=Mus musculus GN=Rps14 PE=2 SV=3)

HSP 1 Score: 208.764 bits (530), Expect = 2.230e-53
Identity = 108/140 (77.14%), Postives = 119/140 (85.00%), Query Frame = 3
Query:   72 MSRRKTREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 488
            M+ RK +E KEE V +LGP V +GE+VFGV HIFASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTPIP+DST
Sbjct:    1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS14_HUMAN (40S ribosomal protein S14 OS=Homo sapiens GN=RPS14 PE=1 SV=3)

HSP 1 Score: 208.764 bits (530), Expect = 2.230e-53
Identity = 108/140 (77.14%), Postives = 119/140 (85.00%), Query Frame = 3
Query:   72 MSRRKTREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 488
            M+ RK +E KEE V +LGP V +GE+VFGV HIFASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTPIP+DST
Sbjct:    1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS14_CRIGR (40S ribosomal protein S14 OS=Cricetulus griseus GN=RPS14 PE=2 SV=3)

HSP 1 Score: 208.764 bits (530), Expect = 2.230e-53
Identity = 108/140 (77.14%), Postives = 119/140 (85.00%), Query Frame = 3
Query:   72 MSRRKTREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 488
            M+ RK +E KEE V +LGP V +GE+VFGV HIFASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTPIP+DST
Sbjct:    1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140          
The following BLAST results are available for this feature:
BLAST of DR403177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
RS143_ARATH3.213e-6084.1740S ribosomal protein S14-3 OS=Arabidopsis thalian... [more]
RS141_MAIZE5.480e-6087.0540S ribosomal protein S14 OS=Zea mays PE=3 SV=1[more]
RS142_MAIZE9.348e-6086.8640S ribosomal protein S14 OS=Zea mays PE=3 SV=1[more]
RS142_ARATH2.720e-5983.4540S ribosomal protein S14-2 OS=Arabidopsis thalian... [more]
RS14_LUPLU1.033e-5884.8940S ribosomal protein S14 OS=Lupinus luteus GN=RPS... [more]
RS141_ARATH1.350e-5882.7340S ribosomal protein S14-1 OS=Arabidopsis thalian... [more]
RS14_CHLRE7.665e-5479.2640S ribosomal protein S14 OS=Chlamydomonas reinhar... [more]
RS14_MOUSE2.230e-5377.1440S ribosomal protein S14 OS=Mus musculus GN=Rps14... [more]
RS14_HUMAN2.230e-5377.1440S ribosomal protein S14 OS=Homo sapiens GN=RPS14... [more]
RS14_CRIGR2.230e-5377.1440S ribosomal protein S14 OS=Cricetulus griseus GN... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244B02 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403177 ID=DR403177; Name=DR403177; organism=Citrus sinensis; type=EST; length=683bp
GGGGAGTCTGACCAGCTGCTGCTTCCGTATTTCGAGGCTTTTGTGATCAA
CTCTCCGTGTCATCAGCAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAA
GGAGGAAAATGTTACTCTTGGACCTGCCGTTAGAGATGGCGAGCATGTAT
TTGGCGTTGCCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATGTG
ACTGACTTGTCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAA
GGTTAAAGCTGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAG
CACAAGATGTTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCAT
ATTAAGCTCCGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGG
TGCTCAGTCAGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCC
GCATAGAGGATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGT
GGTAGAAGGGGTAGAAGGTTGTAATTCTTTTCCTCACACCCATCCATAAC
GTTCAAGATGATGCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTTAGAT
GCAAGAGTTATTTCCCAATTTTGTTGTTTGGAATGTCTGTAGTCTTGGAT
TCCTTTGTGTTACCCTTCCGGATCAATTAAGTT
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