DN792582

Overview
NameDN792582
Unique NameDN792582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length256
Libraries
Library NameType
Citrus sinensis flavedo cellscdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8139 contig Csv1_Contig8139:834..1090. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN792582 vs. ExPASy Swiss-Prot
Match: SSG1_ANTMA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Antirrhinum majus GN=WAXY PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.678e-32
Identity = 38/44 (86.36%), Postives = 43/44 (97.73%), Query Frame = 2
Query:    2 EILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLH 133
            E+LYP+KARGVAKFN+PLAHMI AGADF+L+PSRFEPCGLIQLH
Sbjct:  449 EVLYPDKARGVAKFNVPLAHMITAGADFMLVPSRFEPCGLIQLH 492          

HSP 2 Score: 71.2478 bits (173), Expect = 6.678e-32
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 1
Query:  133 SMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDP 255
            +MRYGT+PI ASTGGLVDTV EGFTGF MG+F+V+C  VDP
Sbjct:  493 AMRYGTIPICASTGGLVDTVTEGFTGFHMGAFNVECATVDP 533          
BLAST of DN792582 vs. ExPASy Swiss-Prot
Match: SSG1_SOLTU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum GN=WAXY PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.133e-31
Identity = 37/44 (84.09%), Postives = 42/44 (95.45%), Query Frame = 2
Query:    2 EILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLH 133
            E+LYP KA+GVAKFN+PLAHMI AGADF+L+PSRFEPCGLIQLH
Sbjct:  448 EVLYPNKAKGVAKFNVPLAHMITAGADFMLVPSRFEPCGLIQLH 491          

HSP 2 Score: 72.4034 bits (176), Expect = 1.133e-31
Identity = 31/41 (75.61%), Postives = 38/41 (92.68%), Query Frame = 1
Query:  133 SMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDP 255
            +MRYGTVPI ASTGGLVDTV+EG+TGF MG+F+V+C+ VDP
Sbjct:  492 AMRYGTVPICASTGGLVDTVKEGYTGFHMGAFNVECDVVDP 532          
BLAST of DN792582 vs. ExPASy Swiss-Prot
Match: SSG1_MANES (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Manihot esculenta GN=WAXY PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.920e-31
Identity = 38/44 (86.36%), Postives = 43/44 (97.73%), Query Frame = 2
Query:    2 EILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLH 133
            E+LYP+KARGVAKFN+PLAHMI AGADF+L+PSRFEPCGLIQLH
Sbjct:  449 EVLYPDKARGVAKFNVPLAHMITAGADFMLVPSRFEPCGLIQLH 492          

HSP 2 Score: 69.707 bits (169), Expect = 1.920e-31
Identity = 30/40 (75.00%), Postives = 37/40 (92.50%), Query Frame = 1
Query:  133 SMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVD 252
            +MRYGTVPIVASTGGLVDTV+EG+TGFQMG+  V+C+ +D
Sbjct:  493 AMRYGTVPIVASTGGLVDTVKEGYTGFQMGALHVECDKID 532          
BLAST of DN792582 vs. ExPASy Swiss-Prot
Match: SSG1_IPOBA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Ipomoea batatas GN=WAXY PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 2.501e-31
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = 2
Query:    2 EILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLH------PCV 142
            E++YP+KARGVAKFN+PLAHMI AGADF+LIPSRFEPCGLIQLH      PC+
Sbjct:  449 EVMYPDKARGVAKFNVPLAHMITAGADFMLIPSRFEPCGLIQLHAMRYGTPCI 501          

HSP 2 Score: 68.9366 bits (167), Expect = 2.501e-31
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 1
Query:  133 SMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDP 255
            +MRYGT  I ASTGGLVDTV+EG+TGF MG+F+VDCE VDP
Sbjct:  493 AMRYGTPCICASTGGLVDTVKEGYTGFHMGAFNVDCETVDP 533          
BLAST of DN792582 vs. ExPASy Swiss-Prot
Match: SSG1_ARATH (Probable granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=WAXY PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.082e-28
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 2
Query:   11 YPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLH 133
            +P KA GVAKFN+PLAHMI AGADFI++PSRFEPCGLIQLH
Sbjct:  454 FPGKAVGVAKFNVPLAHMITAGADFIIVPSRFEPCGLIQLH 494          

HSP 2 Score: 70.8626 bits (172), Expect = 1.082e-28
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 1
Query:  133 SMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDP 255
            +MRYGTVPIVASTGGLVDTV++G+TGF +G F+V CE VDP
Sbjct:  495 AMRYGTVPIVASTGGLVDTVKDGYTGFHIGRFNVKCEVVDP 535          
BLAST of DN792582 vs. ExPASy Swiss-Prot
Match: SSG1B_HORVU (Granule-bound starch synthase 1b, chloroplastic/amyloplastic (Fragment) OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.342e-27
Identity = 34/43 (79.07%), Postives = 40/43 (93.02%), Query Frame = 2
Query:    2 EILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQL 130
            E+ YP+ ARG+AKFN+PLAHM+ AGADFI+IPSRFEPCGLIQL
Sbjct:  406 EVKYPQNARGIAKFNVPLAHMMFAGADFIIIPSRFEPCGLIQL 448          

HSP 2 Score: 63.1586 bits (152), Expect = 3.342e-27
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 1
Query:  127 ITSMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDP 255
            +  M YG VPI +STGGLVDTV EG TGF MGSF+V+ E VDP
Sbjct:  448 LQGMSYGVVPICSSTGGLVDTVREGVTGFHMGSFNVEFETVDP 490          
BLAST of DN792582 vs. ExPASy Swiss-Prot
Match: SSG1_PEA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.586e-27
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 2
Query:   11 YPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLH 133
            YP KA G+ KFN PLAH IIAGADFI+IPSRFEPCGL+QLH
Sbjct:  447 YPGKAIGITKFNSPLAHKIIAGADFIVIPSRFEPCGLVQLH 487          

HSP 2 Score: 67.3958 bits (163), Expect = 9.586e-27
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 1
Query:  133 SMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDP 255
            +M YGTVPIV+STGGLVDTV+EG+TGF  G F V+CE VDP
Sbjct:  488 AMPYGTVPIVSSTGGLVDTVKEGYTGFHAGPFDVECEDVDP 528          
BLAST of DN792582 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSJ (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=WAXY PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.943e-22
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 2
Query:   11 YPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQL 130
            YP K R V KFN PLAH+I+AGAD + +PSRFEPCGLIQL
Sbjct:  453 YPGKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLIQL 492          

HSP 2 Score: 58.151 bits (139), Expect = 7.943e-22
Identity = 28/43 (65.12%), Postives = 31/43 (72.09%), Query Frame = 1
Query:  127 ITSMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDP 255
            +  MRYGT    ASTGGLVDTV EG TGF MG  SVDC+ V+P
Sbjct:  492 LQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEP 534          
BLAST of DN792582 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=WAXY PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 7.943e-22
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 2
Query:   11 YPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQL 130
            YP K R V KFN PLAH+I+AGAD + +PSRFEPCGLIQL
Sbjct:  453 YPGKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLIQL 492          

HSP 2 Score: 58.151 bits (139), Expect = 7.943e-22
Identity = 28/43 (65.12%), Postives = 31/43 (72.09%), Query Frame = 1
Query:  127 ITSMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDP 255
            +  MRYGT    ASTGGLVDTV EG TGF MG  SVDC+ V+P
Sbjct:  492 LQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEP 534          
BLAST of DN792582 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa GN=WAXY PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.944e-22
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 2
Query:   11 YPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQL 130
            YP K R V KFN PLAH+I+AGAD + +PSRFEPCGLIQL
Sbjct:  450 YPGKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLIQL 489          

HSP 2 Score: 58.151 bits (139), Expect = 7.944e-22
Identity = 28/43 (65.12%), Postives = 31/43 (72.09%), Query Frame = 1
Query:  127 ITSMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDP 255
            +  MRYGT    ASTGGLVDTV EG TGF MG  SVDC+ V+P
Sbjct:  489 LQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEP 531          
The following BLAST results are available for this feature:
BLAST of DN792582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
SSG1_ANTMA6.678e-3286.36Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_SOLTU1.133e-3184.09Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_MANES1.920e-3186.36Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_IPOBA2.501e-3175.47Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ARATH1.082e-2882.93Probable granule-bound starch synthase 1, chloropl... [more]
SSG1B_HORVU3.342e-2779.07Granule-bound starch synthase 1b, chloroplastic/am... [more]
SSG1_PEA9.586e-2780.49Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYSJ7.943e-2272.50Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYSI7.943e-2272.50Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYSA7.944e-2272.50Granule-bound starch synthase 1, chloroplastic/amy... [more]

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Properties
Property NameValue
Genbank description33i Citrus sinensis flavedo cells Citrus sinensis cDNA clone Cs-33i 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN792582 ID=DN792582; Name=DN792582; organism=Citrus sinensis; type=EST; length=256bp
GGAGATACTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCAATATTC
CTCTGGCGCATATGATAATAGCAGGAGCTGATTTTATTTTGATTCCAAGC
AGATTTGAACCTTGTGGTCTCATTCAATTACATCCATGCGTTATGGAACC
GTACCTATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGAAGG
CTTTACAGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGG
ATCCAG
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