FC922030

Overview
NameFC922030
Unique NameFC922030
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length296
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9549 contig Csv1_Contig9549:483..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC922030 vs. ExPASy Swiss-Prot
Match: CTNS_ARATH (Cystinosin homolog OS=Arabidopsis thaliana GN=At5g40670 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.584e-35
Identity = 69/98 (70.41%), Postives = 83/98 (84.69%), Query Frame = 2
Query:    2 GRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRK 295
            G  +MIPVAANDVAFS+HAV++T +TLFQI IYERG QKVS++++ IV VVW  AA+CFF+ALP HSWLWLI+ FN+IQV MT +KYIPQA MNF RK
Sbjct:   81 GDKEMIPVAANDVAFSIHAVVMTAVTLFQIFIYERGPQKVSRLAIGIVVVVWGFAAICFFIALPTHSWLWLISIFNSIQVFMTCVKYIPQAKMNFTRK 178          
BLAST of FC922030 vs. ExPASy Swiss-Prot
Match: CTNS_DICDI (Cystinosin homolog OS=Dictyostelium discoideum GN=ctns PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.553e-19
Identity = 40/94 (42.55%), Postives = 66/94 (70.21%), Query Frame = 2
Query:   17 IPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRK 295
            IPV  +D+AF++H  +LT IT+ Q  IY+RG QK SK+ + I +++W++  V   +   N  +WLW+IN+++ +++ +T IKYIPQA +NF+ K
Sbjct:   79 IPVQQSDIAFAIHGFVLTAITIIQCFIYDRGNQKNSKLGIGIATLIWVSLIVMTILGFSNVFTWLWVINYYSYVKLFITFIKYIPQAYLNFKNK 172          
BLAST of FC922030 vs. ExPASy Swiss-Prot
Match: CTNS_MOUSE (Cystinosin OS=Mus musculus GN=Ctns PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.067e-15
Identity = 43/93 (46.24%), Postives = 58/93 (62.37%), Query Frame = 2
Query:   20 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRK 295
            PV +ND  FS+HAV LT+I + Q  +YERG Q+VS  S+  + + WL   V   VA     +WL  +  F+ I++I+TLIKY PQA MNF  K
Sbjct:  200 PVDSNDAFFSLHAVALTLIVILQCCLYERGNQRVSWPSIGFLVLAWLFVLVTMIVAAVGITTWLQFLFCFSYIKLIITLIKYFPQAYMNFYYK 292          
BLAST of FC922030 vs. ExPASy Swiss-Prot
Match: CTNS_HUMAN (Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.642e-15
Identity = 42/93 (45.16%), Postives = 60/93 (64.52%), Query Frame = 2
Query:   20 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRK 295
            PV +NDV FS+HAV+LT+I + Q  +YERG Q+VS  ++  + + WL A V   VA     +WL  +  F+ I++ +TL+KY PQA MNF  K
Sbjct:  200 PVNSNDVFFSLHAVVLTLIIIVQCCLYERGGQRVSWPAIGFLVLAWLFAFVTMIVAAVGVTTWLQFLFCFSYIKLAVTLVKYFPQAYMNFYYK 292          
BLAST of FC922030 vs. ExPASy Swiss-Prot
Match: CTNS_BOVIN (Cystinosin OS=Bos taurus GN=CTNS PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.474e-14
Identity = 38/93 (40.86%), Postives = 61/93 (65.59%), Query Frame = 2
Query:   20 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFV-ALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRK 295
            PV +NDV FS+HAV LT++ + Q  +YERG Q+VS ++++ + + WL   +   + A+   +WL  +  F+ I++ +TL+KY PQA MNF  K
Sbjct:  200 PVDSNDVFFSLHAVALTLVVIVQCLLYERGSQRVSWLAISFLVLSWLFTLIALIMAAVGATTWLQFLFCFSYIKLAVTLVKYFPQAYMNFHYK 292          
BLAST of FC922030 vs. ExPASy Swiss-Prot
Match: CTNS_DROME (Cystinosin homolog OS=Drosophila melanogaster GN=CG17119 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.380e-12
Identity = 38/95 (40.00%), Postives = 58/95 (61.05%), Query Frame = 2
Query:   20 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHS---WLWLINFFNAIQVIMTLIKYIPQAIMNFRRK 295
            PV  NDV FS+HA+  T IT+ Q   Y+R  Q+VS I+  I+++   A  V     L   S   WL  + + + +++ +T+IKY+PQA+MN+RRK
Sbjct:  205 PVMLNDVVFSLHAMFATCITILQCFFYQRAQQRVSFIAYGILAI--FAVVVVVSAGLAGGSVIHWLDFLYYCSYVKLTITIIKYVPQALMNYRRK 297          
The following BLAST results are available for this feature:
BLAST of FC922030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CTNS_ARATH2.584e-3570.41Cystinosin homolog OS=Arabidopsis thaliana GN=At5g... [more]
CTNS_DICDI7.553e-1942.55Cystinosin homolog OS=Dictyostelium discoideum GN=... [more]
CTNS_MOUSE5.067e-1546.24Cystinosin OS=Mus musculus GN=Ctns PE=1 SV=1[more]
CTNS_HUMAN8.642e-1545.16Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2[more]
CTNS_BOVIN1.474e-1440.86Cystinosin OS=Bos taurus GN=CTNS PE=2 SV=1[more]
CTNS_DROME1.380e-1240.00Cystinosin homolog OS=Drosophila melanogaster GN=C... [more]
back to top
Properties
Property NameValue
Genbank descriptionC06056G05T7 RindPdigS Citrus sinensis cDNA clone C06056G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922030 ID=FC922030; Name=FC922030; organism=Citrus sinensis; type=EST; length=296bp
CGGCCGCGATCAGATGATTCCCGTGGCAGCAAATGATGTTGCGTTTTCAA
TGCATGCTGTTCTCTTGACAATAATTACCCTGTTCCAAATTGCAATCTAT
GAACGTGGTGTTCAAAAGGTATCTAAGATTTCTATGGCAATTGTCTCTGT
TGTTTGGTTGGCTGCCGCAGTTTGTTTCTTCGTAGCATTGCCAAACCATT
CTTGGCTTTGGCTCATCAACTTCTTTAACGCTATTCAAGTTATTATGACA
CTCATCAAGTATATTCCACAGGCCATCATGAACTTTAGGCGAAAGA
back to top