EY701058

Overview
NameEY701058
Unique NameEY701058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS18_ARATH (40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 1.581e-61
Identity = 108/132 (81.82%), Postives = 112/132 (84.85%), Query Frame = 1 
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DGKQKIMFALTSIKGIGRRLANIVCKKADVDMN+RAGELSAAE+DNLM +VANPRQFKIPDWFLN  KDYKDGKYSQVVSNALDMKL DD+ERL  IRNHRGLRHYWGL              KTVGVSKKR
Sbjct:   21 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

HSP 2 Score: 41.2022 bits (95), Expect = 1.581e-61
Identity = 19/20 (95.00%), Postives = 20/20 (100.00%), Query Frame = 3 
Query:   57 MSLVANEDFQHILRVLNTNV 116
            MSLVANE+FQHILRVLNTNV
Sbjct:    1 MSLVANEEFQHILRVLNTNV 20
[Close]
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS18_BRABE (40S ribosomal protein S18 OS=Branchiostoma belcheri GN=RPS18 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.311e-47
Identity = 83/132 (62.88%), Postives = 104/132 (78.79%), Query Frame = 1 
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DG++KIMFALTSIKG+GRR +NIVCKKAD+D+++RAGELS  E++ L+ ++ NPRQ+KIPDWFLN  KD KDGKYSQV++N+LD KL +D+ERL  IR HRGLRHYWGL              +TVGVSKK+
Sbjct:   21 DGRRKIMFALTSIKGVGRRYSNIVCKKADIDLSKRAGELSDEEVERLITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVMANSLDNKLREDLERLKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152

HSP 2 Score: 33.8834 bits (76), Expect = 2.311e-47
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = 3 
Query:   57 MSLVANEDFQHILRVLNTNV 116
            MSLV  E FQHILRV+NTN+
Sbjct:    1 MSLVIPEKFQHILRVMNTNI 20
[Close]
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS18_AEQIR (40S ribosomal protein S18 OS=Aequipecten irradians GN=RPS18 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.508e-46
Identity = 82/132 (62.12%), Postives = 104/132 (78.79%), Query Frame = 1 
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DGK+KIMFA+T+IKG+GRR AN+VCKKADVD+ +RAGELS  E++ ++ +++NPRQ+KIP+WFLN  KD KDGKYSQV+SNALD KL +D+ERL  IR HRGLRHYWGL              +TVGV+KK+
Sbjct:   21 DGKRKIMFAMTAIKGMGRRYANVVCKKADVDITKRAGELSEDEIERVITIMSNPRQYKIPNWFLNRQKDVKDGKYSQVMSNALDNKLREDLERLKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVAKKK 152

HSP 2 Score: 32.3426 bits (72), Expect = 2.508e-46
Identity = 13/20 (65.00%), Postives = 17/20 (85.00%), Query Frame = 3 
Query:   57 MSLVANEDFQHILRVLNTNV 116
            M+L+  E FQHILRV+NTN+
Sbjct:    1 MALIIPEKFQHILRVMNTNI 20
[Close]
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS18_DANRE (40S ribosomal protein S18 OS=Danio rerio GN=rps18 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 8.511e-44
Identity = 75/132 (56.82%), Postives = 101/132 (76.52%), Query Frame = 1 
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DG++KI FA+T+IKG+GRR A++V +KAD+D+N+RAGEL+  E++ ++ ++ NPRQ+KIPDWFLN  KD KDGKYSQV++N LD KL +D+ERL  IR HRGLRH+WGL              +TVGVSKK+
Sbjct:   21 DGRRKIAFAITAIKGVGRRYAHVVLRKADIDLNKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQKDIKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152

HSP 2 Score: 34.6538 bits (78), Expect = 8.511e-44
Identity = 16/20 (80.00%), Postives = 17/20 (85.00%), Query Frame = 3 
Query:   57 MSLVANEDFQHILRVLNTNV 116
            MSLV  E FQHILRVLNTN+
Sbjct:    1 MSLVIPEKFQHILRVLNTNI 20
[Close]
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS18_CHLRE (40S ribosomal protein S18 OS=Chlamydomonas reinhardtii GN=RPS18 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.455e-43
Identity = 76/132 (57.58%), Postives = 98/132 (74.24%), Query Frame = 1 
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DGK KIM+A+T+I+GIGRR +N+VCKKA+VD+ + AGE SA EL+ +M +VANPR +KIPDWFLN  KD+K G++SQ+ S+ LD  + DD+ERL  IR HRGLRHYWGL              KTVGV+KK+
Sbjct:   22 DGKNKIMYAMTAIRGIGRRFSNLVCKKAEVDLRKAAGECSADELERMMGIVANPRAYKIPDWFLNRQKDHKTGRFSQLTSSQLDTVMRDDLERLKKIRGHRGLRHYWGLRVRGQHTKTTGRAGKTVGVAKKK 153

HSP 2 Score: 34.2686 bits (77), Expect = 2.455e-43
Identity = 15/19 (78.95%), Postives = 17/19 (89.47%), Query Frame = 3 
Query:   60 SLVANEDFQHILRVLNTNV 116
            SLV  +DFQHILR+LNTNV
Sbjct:    3 SLVQGDDFQHILRLLNTNV 21
[Close]
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS18_ICTPU (40S ribosomal protein S18 OS=Ictalurus punctatus GN=rps18 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 3.199e-43
Identity = 74/132 (56.06%), Postives = 101/132 (76.52%), Query Frame = 1 
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DG++KI FA+T+IKG+GRR A++V +KAD+D+++RAGEL+  E++ ++ ++ NPRQ+KIPDWFLN  KD KDGKYSQV++N LD KL +D+ERL  IR HRGLRH+WGL              +TVGVSKK+
Sbjct:   21 DGRRKIAFAITAIKGVGRRYAHVVLRKADIDLSKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152

HSP 2 Score: 34.6538 bits (78), Expect = 3.199e-43
Identity = 16/20 (80.00%), Postives = 17/20 (85.00%), Query Frame = 3 
Query:   57 MSLVANEDFQHILRVLNTNV 116
            MSLV  E FQHILRVLNTN+
Sbjct:    1 MSLVIPEKFQHILRVLNTNI 20
[Close]
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS18_RAT (40S ribosomal protein S18 OS=Rattus norvegicus GN=Rps18 PE=1 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 4.168e-43
Identity = 74/132 (56.06%), Postives = 100/132 (75.76%), Query Frame = 1 
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DG++KI FA+T+IKG+GRR A++V +KAD+D+ +RAGEL+  E++ ++ ++ NPRQ+KIPDWFLN  KD KDGKYSQV++N LD KL +D+ERL  IR HRGLRH+WGL              +TVGVSKK+
Sbjct:   21 DGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152

HSP 2 Score: 34.6538 bits (78), Expect = 4.168e-43
Identity = 16/20 (80.00%), Postives = 17/20 (85.00%), Query Frame = 3 
Query:   57 MSLVANEDFQHILRVLNTNV 116
            MSLV  E FQHILRVLNTN+
Sbjct:    1 MSLVIPEKFQHILRVLNTNI 20
[Close]
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS18_PIG (40S ribosomal protein S18 OS=Sus scrofa GN=RPS18 PE=2 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 4.168e-43
Identity = 74/132 (56.06%), Postives = 100/132 (75.76%), Query Frame = 1 
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DG++KI FA+T+IKG+GRR A++V +KAD+D+ +RAGEL+  E++ ++ ++ NPRQ+KIPDWFLN  KD KDGKYSQV++N LD KL +D+ERL  IR HRGLRH+WGL              +TVGVSKK+
Sbjct:   21 DGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152

HSP 2 Score: 34.6538 bits (78), Expect = 4.168e-43
Identity = 16/20 (80.00%), Postives = 17/20 (85.00%), Query Frame = 3 
Query:   57 MSLVANEDFQHILRVLNTNV 116
            MSLV  E FQHILRVLNTN+
Sbjct:    1 MSLVIPEKFQHILRVLNTNI 20
[Close]
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS18_MOUSE (40S ribosomal protein S18 OS=Mus musculus GN=Rps18 PE=2 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 4.168e-43
Identity = 74/132 (56.06%), Postives = 100/132 (75.76%), Query Frame = 1 
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DG++KI FA+T+IKG+GRR A++V +KAD+D+ +RAGEL+  E++ ++ ++ NPRQ+KIPDWFLN  KD KDGKYSQV++N LD KL +D+ERL  IR HRGLRH+WGL              +TVGVSKK+
Sbjct:   21 DGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152

HSP 2 Score: 34.6538 bits (78), Expect = 4.168e-43
Identity = 16/20 (80.00%), Postives = 17/20 (85.00%), Query Frame = 3 
Query:   57 MSLVANEDFQHILRVLNTNV 116
            MSLV  E FQHILRVLNTN+
Sbjct:    1 MSLVIPEKFQHILRVLNTNI 20
[Close]
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS18_HUMAN (40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 4.168e-43
Identity = 74/132 (56.06%), Postives = 100/132 (75.76%), Query Frame = 1 
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DG++KI FA+T+IKG+GRR A++V +KAD+D+ +RAGEL+  E++ ++ ++ NPRQ+KIPDWFLN  KD KDGKYSQV++N LD KL +D+ERL  IR HRGLRH+WGL              +TVGVSKK+
Sbjct:   21 DGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152

HSP 2 Score: 34.6538 bits (78), Expect = 4.168e-43
Identity = 16/20 (80.00%), Postives = 17/20 (85.00%), Query Frame = 3 
Query:   57 MSLVANEDFQHILRVLNTNV 116
            MSLV  E FQHILRVLNTN+
Sbjct:    1 MSLVIPEKFQHILRVLNTNI 20
The following BLAST results are available for this feature:
BLAST of EY701058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
RS18_ARATH1.581e-6181.8240S ribosomal protein S18 OS=Arabidopsis thaliana ... [more]
RS18_BRABE2.311e-4762.8840S ribosomal protein S18 OS=Branchiostoma belcher... [more]
RS18_AEQIR2.508e-4662.1240S ribosomal protein S18 OS=Aequipecten irradians... [more]
RS18_DANRE8.511e-4456.8240S ribosomal protein S18 OS=Danio rerio GN=rps18 ... [more]
RS18_CHLRE2.455e-4357.5840S ribosomal protein S18 OS=Chlamydomonas reinhar... [more]
RS18_ICTPU3.199e-4356.0640S ribosomal protein S18 OS=Ictalurus punctatus G... [more]
RS18_RAT4.168e-4356.0640S ribosomal protein S18 OS=Rattus norvegicus GN=... [more]
RS18_PIG4.168e-4356.0640S ribosomal protein S18 OS=Sus scrofa GN=RPS18 P... [more]
RS18_MOUSE4.168e-4356.0640S ribosomal protein S18 OS=Mus musculus GN=Rps18... [more]
RS18_HUMAN4.168e-4356.0640S ribosomal protein S18 OS=Homo sapiens GN=RPS18... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-700-102-E05-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY701058 ID=EY701058; Name=EY701058; organism=Citrus sinensis; type=EST; length=878bp
CACGCGTCCGGCCGAAGAGCCTCTCTTCTCTTCATCATCAATCCTCACAA
TCGATAATGTCTCTGGTGGCGAACGAAGATTTTCAGCACATTTTGCGTGT
GCTGAACACTAACGTCGGACGGGAAGCAGAAGATTATGTTTGCGCTTACT
TCAATTAAGGGTATTGGAAGGCGACTGGCTAACATCGTTTGCAAAAAAGC
TGATGTTGACATGAACGAGAGGGCCGGTGAACTATCTGCTGCTGAACTTG
ACAATCTCATGGTCGTTGTTGCAAATCCCCGACAGTTTAAAATCCCTGAT
TGGTTCTTGAACATACATAAGGATTACAAAGATGGAAAGTATTCTCAGGT
TGTATCCAATGCACTGGACATGAAGTTGACAGATGATGTGGAGCGTCTGA
ACAATATCAGGAACCACCGTGGTCTCAGGCACTACTGGGGTCTTCGTGTC
CGTGGACGACACACCAATACCACCGGTCGTCGTGGAAAGACTGTTGGTGT
CTCCAAGAAGCGTTGAGCTGTCCGTTATCACTGTGATGAACAATCTATAC
ACATGTGCAAGAAGGAGTTGGGACTTGCTATTGCTGAACCTGTGCATCAG
ACAATATTAGATCTATCTGCTTTTCTTGGGATGGGGTTCAAAGCATTCGG
ACCTGTCCGTCCTTTAGCGATGGATTCTCTCGAGCGGTAATATTTCGATT
CCCACGGTCTTGCACCCTATATTTCAGCGCCCCTCTTGTATCTCCTTCCA
GTTTCGAGCTCAACCAAACTACAGCCGGCGCCCGCCGCAGCGCCCAACGG
GGCGGTCCGCCTAGAAGGATCCGACCCTTACTCTCCCCTGCATGTCAACG
TGGTGGGCCTCTTTGTGGGGGGCCCTGA
back to top