EY701053

Overview
NameEY701053
Unique NameEY701053
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9918 contig Csv1_Contig9918:1..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY701053 vs. ExPASy Swiss-Prot
Match: FB233_ARATH (F-box protein At4g12560 OS=Arabidopsis thaliana GN=At4g12560 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.009e-15
Identity = 41/129 (31.78%), Postives = 72/129 (55.81%), Query Frame = 3
Query:  249 KPLLRFRCVSKCFCSLIDSQDFVKLHLNQAIETNSGLSLIVPTLTSDNKFFSLELDSVDNPVEIEYPFKKYNRGHTSVIGCCHGLLAMSNRRLXMSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGV 635
            K L+R R +SK    LI+  DF++ HL++ ++T   L ++   L    + +S++LDS+D+  ++E+P K+   G T V G  +GL+ +SN    ++VFNP+T++    P    D      T  + F G+
Sbjct:   19 KTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMIL---LRGALRLYSVDLDSLDSVSDVEHPMKR--GGPTEVFGSSNGLIGLSNSPTDLAVFNPSTRQIHRLPPSSIDLPDGSSTRGYVFYGL 142          

HSP 2 Score: 31.5722 bits (70), Expect = 3.009e-15
Identity = 15/50 (30.00%), Postives = 29/50 (58.00%), Query Frame = 1
Query:  631 GCGYDASTDDYNLVGIIQSYEVDE---------LEGVIYSLRAETWRRTQ 753
            G GYD+ +DDY +V ++Q +++D           E  ++SL+  +W+R +
Sbjct:  141 GLGYDSVSDDYKVVRMVQ-FKIDSEDELGCSFPYEVKVFSLKKNSWKRIE 189          
BLAST of EY701053 vs. ExPASy Swiss-Prot
Match: FB244_ARATH (F-box protein At4g22390 OS=Arabidopsis thaliana GN=At4g22390 PE=2 SV=3)

HSP 1 Score: 62.3882 bits (150), Expect = 1.685e-11
Identity = 36/107 (33.64%), Postives = 60/107 (56.07%), Query Frame = 3
Query:  255 LLRFRCVSKCFCSLIDSQDFVKLHLNQAIETNSGLSLIVPTLTSDNKFFSLELDSVDNPVEIEYPFKKYNRGHTSVIGCCHGLLAMSNRRLXMSVFNPTTKKFKLFP 575
            L++ R +SK   SLIDS +FV  HL + +ET   L ++   L       ++ELDS +N  +I +P +    G T V G  +G++ + N  + +++FNP+T+K    P
Sbjct:   21 LVKCRVLSKPCFSLIDSPEFVSSHLRRRLETGEHLMIL---LRGPRLLRTVELDSPENVSDIPHPLQA--GGFTEVFGSFNGVIGLCNSPVDLAIFNPSTRKIHRLP 122          

HSP 2 Score: 28.1054 bits (61), Expect = 1.685e-11
Identity = 14/46 (30.43%), Postives = 25/46 (54.35%), Query Frame = 1
Query:  631 GCGYDASTDDYNLVGIIQSYEVD-------ELEGVIYSLRAETWRR 747
            G GYD+  DD+ +V I+Q    +        +E  ++SL+  +W+R
Sbjct:  141 GLGYDSVGDDFKVVRIVQCKLKEGKKKFPCPVEVKVFSLKKNSWKR 186          
The following BLAST results are available for this feature:
BLAST of EY701053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FB233_ARATH3.009e-1531.78F-box protein At4g12560 OS=Arabidopsis thaliana GN... [more]
FB244_ARATH1.685e-1133.64F-box protein At4g22390 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-102-D12-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY701053 ID=EY701053; Name=EY701053; organism=Citrus sinensis; type=EST; length=868bp
CACGCGTCCGCCCACGCGTCCGAGAAATTCACTTCTCAACACCCAATTCT
TCGACTTGGCTACTGTAATATATTATTCTTCAGGTACTCTTTGCCCTTTG
CTTTGATTTGCTTTACTTGTAAGATTTTGTCAATTACCTTTCCAAATCAG
TGAAAGGGTCTTGGATATTGGATTGTGCTCAAAACCACTAACAAATGTCA
AGCCTCCCGCTGGATTTAATCTCCGACATACTAAGCCGGCTACCGGTAAA
GCCTCTGCTGCGCTTCAGGTGCGTATCAAAGTGTTTTTGTAGCTTAATCG
ACAGCCAAGATTTCGTAAAGCTGCATCTCAATCAAGCCATCGAAACCAAC
TCCGGTCTCAGTCTTATTGTTCCAACTTTAACGTCAGATAACAAATTTTT
CTCTCTGGAGTTAGATTCAGTTGATAATCCTGTTGAAATTGAGTACCCAT
TTAAGAAATATAATAGGGGTCACACTTCAGTGATTGGTTGTTGCCATGGA
TTGCTTGCTATGTCTAACCGGAGGTTANGTATGTCCGTGTTCAACCCAAC
AACTAAGAAATTCAAACTTTTCCCACAGTTTTGGAGTGATTGTTATACGG
ATTACATGACTAATAATTTTCACTTCGATGGGGTGTGGTTATGATGCTTC
TACTGATGACTATAACTTGGTCGGAATTATACAGTCGTACGAAGTAGATG
AGCTTGAAGGTGTTATTTATAGTTTGAGAGCTGAGACTTGGAGACGGACT
CAAGAATCCCATATTATATTCTGGATGATCCATGTAATGGGGTTTCCATT
TGCCGTCCCTCTGAATTGGTGGCGGCCAAAGGCCCTGTAAAAACTGGGTC
CAAATTGATTCTTGGATT
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