CX046770

Overview
NameCX046770
Unique NameCX046770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046770_ssr116 microsatellite CX046770_ssr116:116..130. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3805 contig Csv1_Contig3805:152..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.674e-42
Identity = 89/141 (63.12%), Postives = 104/141 (73.76%), Query Frame = -2
Query:  308 FSLDIWDPFEGF---SSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXKAIDIS 721
            FS D+WDPFEGF   SS++AN  S+AR+ +A  N R+DWKETPEAHVFKADLPGL         ED  VLQISGERS+E EEKNDKWHRVER+SGKFMRRF LPENAKM++++A+MENGVL              K+IDIS
Sbjct:   19 FSQDLWDPFEGFFTPSSALANA-STARDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVVPKAPEKKPQVKSIDIS 158          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.383e-40
Identity = 86/141 (60.99%), Postives = 103/141 (73.05%), Query Frame = -2
Query:  305 FSLDIWDPFEGF--SSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXKAIDISA 721
            FSLD+WDPF+ F  ++S  +  S  +E SA  +TRIDWKETPEAHVFKADLPGL         ED RVLQISGER+ E+E+KND+WHRVERSSGKFMRRF LPENAKMDQ++A+MENGVL              K+I+IS+
Sbjct:    3 FSLDVWDPFKDFPFTNSALSASSFPQENSAFVSTRIDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEIKKPEVKSIEISS 143          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.383e-40
Identity = 81/138 (58.70%), Postives = 100/138 (72.46%), Query Frame = -2
Query:  308 FSLDIWDPFEGFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXKAIDIS 721
            FSLD+WDPF+ F    ++     +ET+A  NT IDWKETP+AHVFKADLPGL         E+G+VLQISGER++E+EEKNDKWHRVERSSGKF+RRF LPENAK+D+++A+M NGV+              KAIDIS
Sbjct:   19 FSLDVWDPFKDFPLVTSSASEFGKETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKVEIKKPEVKAIDIS 156          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.112e-40
Identity = 82/118 (69.49%), Postives = 92/118 (77.97%), Query Frame = -2
Query:  368 FSLDIWDPFEGFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 721
            FSLD WDPF+G  S+       ARET+A+ N RIDWKETPEAHV KADLPG+         EDGRVLQISGER REQEEK+D WHRVERSSGKF+RRF LPENAKMD+++A MENGVL
Sbjct:   19 FSLDTWDPFQGIIST-----EPARETAAIVNARIDWKETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENGVL 131          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 3.112e-40
Identity = 87/140 (62.14%), Postives = 100/140 (71.43%), Query Frame = -2
Query:  308 FSLDIWDPFEGF--SSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXKAIDIS 721
            FSLD++DPFEGF   S +AN P  A + +A  N ++DW+ETPEAHVFKADLPGL         EDG +LQISGERS E EEKNDKWHRVERSSGKF RRF LPENAKM++I+ASMENGVL              K+IDIS
Sbjct:   19 FSLDVFDPFEGFLTPSGLANAP--AMDVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDIS 156          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.065e-40
Identity = 85/142 (59.86%), Postives = 102/142 (71.83%), Query Frame = -2
Query:  308 FSLDIWDPFEGF----SSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXKAIDIS 721
            FSLD+WDPF+ F    + S A+ P  +RE SA  +TR+DWKETPEAHVFKAD+PGL         ED +VLQISGER+ E+E+KND WHRVERSSGKFMRRF LPENAK++Q++ASMENGVL              KAI+IS
Sbjct:   19 FSLDVWDPFKDFPFPNTLSSASFPEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEIS 160          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.065e-40
Identity = 85/139 (61.15%), Postives = 101/139 (72.66%), Query Frame = -2
Query:  308 FSLDIWDPFEGFSSSVANIPSS-ARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXKAIDIS 721
            FSLD+WDPF+ F  + + + +S  RE SA  +TR+DWKETPEAHVFKADLPG+         ED RVLQISGERS E+E+KND+WHR+ERSSGKFMRRF LPENAKMDQ++A+MENGVL              K IDIS
Sbjct:   19 FSLDVWDPFKDFPFNNSALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEVKKPEVKTIDIS 157          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.933e-40
Identity = 82/121 (67.77%), Postives = 97/121 (80.17%), Query Frame = -2
Query:  368 FSLD-IWDPFEGFSSSVANIPSS--ARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 721
            FSLD IWDPF G  S+++ +P S  A ET+A AN RIDWKETPEAHVFKADLPG+         EDG VL+ISG+R+RE+EEKND WHRVERSSG+FMR+F LPENAK+DQ++A MENGVL
Sbjct:   21 FSLDEIWDPFFGLPSTLSTVPRSETAAETAAFANARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVL 141          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.183e-39
Identity = 86/128 (67.19%), Postives = 95/128 (74.22%), Query Frame = -2
Query:  368 FSLDIWDPFEGFS------SSVANIPSSAR----ETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 721
            FSLD+WDPF+GF       SS +  PS  R    ET+A A  RIDWKETPEAHVFKAD+PGL         EDG VLQISGERS+EQEEK DKWHRVERSSGKF+RRF LPEN K +QI+ASMENGVL
Sbjct:   13 FSLDLWDPFDGFPFGSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVL 140          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.017e-39
Identity = 82/118 (69.49%), Postives = 95/118 (80.51%), Query Frame = -2
Query:  368 FSLDIWDPFEGFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 721
            FS+D++DPF+    +V+N    + ETSA ANTRIDWKETPEAHVFKADLPGL         E+ RVLQISGER+ E+E+KND WHRVERSSGKFMRRF LPENAKMDQ++ASMENGVL
Sbjct:   20 FSIDVFDPFKELGFTVSN----SGETSAFANTRIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVL 133          
The following BLAST results are available for this feature:
BLAST of CX046770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HS181_ARATH9.674e-4263.1218.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP11_MEDSA2.383e-4060.9918.1 kDa class I heat shock protein (Fragment) OS=... [more]
HSP11_DAUCA2.383e-4058.7017.8 kDa class I heat shock protein OS=Daucus caro... [more]
HSP11_HELAN3.112e-4069.4917.6 kDa class I heat shock protein OS=Helianthus ... [more]
HS17C_ARATH3.112e-4062.1417.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HSP16_SOYBN4.065e-4059.8618.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_MEDSA4.065e-4061.1518.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP11_CHERU6.933e-4067.7718.3 kDa class I heat shock protein OS=Chenopodium... [more]
HS181_ORYSJ1.183e-3967.1918.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP12_SOLPE2.017e-3969.4917.6 kDa class I heat shock protein OS=Solanum per... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10B01_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10B01-D1-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046770 ID=CX046770; Name=CX046770; organism=Citrus sinensis; type=EST; length=722bp
TTTTTTTTTTTTTTTTTACATTATTTCTATAAGCTTAATTTACAACAAAC
ATTTTATAACTTCATGTATAATACACATGAGATCACATCACAAAAGTACA
ACCAGAAACACAAAAACAAGACAAGACAAGTAGACAACACTACACTACAA
TATTATTTACTATTATTATTCAGACAGAAAAAAAAACTGATCAAAAGGCC
AAAAAACCCTACTTGATTTAGTTAAAGCCATGTGCATGGATGTATATGTA
GATGACATATCATTTTGTATGACAACTTGTTTCTCGGCCTCGGGCTCAAC
CTCAGGCAGAAATGTCAATAGCCTTAACCTCAGGCTTCTTAACATCCTCT
TTAGGGACAGTGACAGTAAGCACACCGTTCTCCATGCTAGCTCTGATCTG
ATCCATCTTGGCATTCTCAGGCAACCCGAACCTCCTCATGAACTTTCCAC
TGCTCCTCTCAACACGGTGCCACTTGTCGTTCTTCTCCTCCTGCTCTCTG
CTCCTCTCTCCACTTATCTGCAGAACCCTTCCATCTTCAACCTCCACCTT
CACCTCTTCCTTCTTCAGCCCCGGAAGATCAGCCTTAAACACATGAGCTT
CTGGGGTCTCTTTCCAGTCAATTCTTGTGTTGGCTAAGGCTGATGTTTCC
CTTGCTGAGGACGGAATATTAGCGACTGACGATGAGAACCCTTCAAAGGG
ATCCCATATGTCCAGTGAAAAC
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