CX046769

Overview
NameCX046769
Unique NameCX046769
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046769_ssr21 microsatellite CX046769_ssr21:21..32. BLAST: Citrus ESTs to Prunus persica proteins V1
CX046769_ssr78 microsatellite CX046769_ssr78:78..87. BLAST: Citrus ESTs to Prunus persica proteins V1
CX046769_ssr744 microsatellite CX046769_ssr744:744..758. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3805 contig Csv1_Contig3805:1..872. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.756e-47
Identity = 96/150 (64.00%), Postives = 111/150 (74.00%), Query Frame = 3
Query:  126 GRRSNVFDPFSLDIWDPFEGF---SSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXXAIDIS 566
            GRRSNVFDPFS D+WDPFEGF   SS++AN  S+AR+ +A  N R+DWKETPEAHVFKADLPGL          D  VLQISGERS+E EEKNDKWHRVER+SGKFMRRF LPENAKM++++A+MENGVL               +IDIS
Sbjct:   10 GRRSNVFDPFSQDLWDPFEGFFTPSSALANA-STARDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVVPKAPEKKPQVKSIDIS 158          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.047e-46
Identity = 89/150 (59.33%), Postives = 108/150 (72.00%), Query Frame = 3
Query:  117 FDSGRRSNVFDPFSLDIWDPFEGFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXXAIDIS 566
            F  GRRSNVFDPFSLD+WDPF+ F    ++     +ET+A  NT IDWKETP+AHVFKADLPGL          +G+VLQISGER++E+EEKNDKWHRVERSSGKF+RRF LPENAK+D+++A+M NGV+               AIDIS
Sbjct:    7 FFGGRRSNVFDPFSLDVWDPFKDFPLVTSSASEFGKETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKVEIKKPEVKAIDIS 156          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.047e-46
Identity = 90/133 (67.67%), Postives = 108/133 (81.20%), Query Frame = 3
Query:  117 FDSGRRSNVFDPFSLD-IWDPFEGFSSSVANIPSS--ARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 506
            F++GRRSN+FDPFSLD IWDPF G  S+++ +P S  A ET+A AN RIDWKETPEAHVFKADLPG+          DG VL+ISG+R+RE+EEKND WHRVERSSG+FMR+F LPENAK+DQ++A MENGVL
Sbjct:    9 FNTGRRSNIFDPFSLDEIWDPFFGLPSTLSTVPRSETAAETAAFANARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVL 141          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 5.197e-46
Identity = 93/151 (61.59%), Postives = 109/151 (72.19%), Query Frame = 3
Query:  117 FDSGRRSNVFDPFSLDIWDPFEGFSSSVANIPSS-ARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXXAIDIS 566
            F  GRRSNVFDPFSLD+WDPF+ F  + + + +S  RE SA  +TR+DWKETPEAHVFKADLPG+          D RVLQISGERS E+E+KND+WHR+ERSSGKFMRRF LPENAKMDQ++A+MENGVL                IDIS
Sbjct:    7 FFGGRRSNVFDPFSLDVWDPFKDFPFNNSALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEVKKPEVKTIDIS 157          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.158e-45
Identity = 92/154 (59.74%), Postives = 110/154 (71.43%), Query Frame = 3
Query:  117 FDSGRRSNVFDPFSLDIWDPFEGF----SSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXXAIDIS 566
            F  GRR+NVFDPFSLD+WDPF+ F    + S A+ P  +RE SA  +TR+DWKETPEAHVFKAD+PGL          D +VLQISGER+ E+E+KND WHRVERSSGKFMRRF LPENAK++Q++ASMENGVL               AI+IS
Sbjct:    7 FFGGRRNNVFDPFSLDVWDPFKDFPFPNTLSSASFPEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEIS 160          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.975e-45
Identity = 93/149 (62.42%), Postives = 107/149 (71.81%), Query Frame = 3
Query:  126 GRRSNVFDPFSLDIWDPFEGF--SSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXXAIDIS 566
            GRR+NVFDPFSLD++DPFEGF   S +AN P  A + +A  N ++DW+ETPEAHVFKADLPGL          DG +LQISGERS E EEKNDKWHRVERSSGKF RRF LPENAKM++I+ASMENGVL               +IDIS
Sbjct:   10 GRRTNVFDPFSLDVFDPFEGFLTPSGLANAP--AMDVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDIS 156          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.400e-45
Identity = 90/131 (68.70%), Postives = 104/131 (79.39%), Query Frame = 3
Query:  117 FDSGRRSNVFDPFSLDIWDPFEGFSSSVANIPSS-ARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 506
            F SGRRSNVFDPFSLD+WDP + F  S ++  +S  RE  A  +TR+DWKETPEAHVFKADLPGL          D RVLQISGERS E+E+KND+WHRVERSSGKF+RRF LPENAKMD+++ASMENGVL
Sbjct:    7 FFSGRRSNVFDPFSLDVWDPLKDFPFSNSSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVL 137          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.400e-45
Identity = 88/130 (67.69%), Postives = 101/130 (77.69%), Query Frame = 3
Query:  117 FDSGRRSNVFDPFSLDIWDPFEGFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 506
            F + +RSN+FDPFSLD WDPF+G  S+       ARET+A+ N RIDWKETPEAHV KADLPG+          DGRVLQISGER REQEEK+D WHRVERSSGKF+RRF LPENAKMD+++A MENGVL
Sbjct:    7 FFTSKRSNIFDPFSLDTWDPFQGIIST-----EPARETAAIVNARIDWKETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENGVL 131          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 7.505e-45
Identity = 88/151 (58.28%), Postives = 108/151 (71.52%), Query Frame = 3
Query:  117 FDSGRRSNVFDPFSLDIWDPFEGF-SSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXXAIDIS 566
            F  GRR+NVFDPFSLD+WDPFEGF +  + N P  A++ +A  N ++DW+ETPEAHVFKAD+PGL          DG +LQISGERS E EEK+D WHRVERSSGKFMRRF LPENAK+++++ASMENGVL               ++DIS
Sbjct:    7 FFGGRRTNVFDPFSLDVWDPFEGFLTPGLTNAP--AKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDIS 155          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.672e-44
Identity = 93/151 (61.59%), Postives = 107/151 (70.86%), Query Frame = 3
Query:  117 FDSGRRSNVFDPFSLDIWDPFEGFSSSVANIPSS-ARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXXAIDIS 566
            F  GRRS+VFDPFSLD+WDPF+ F       PSS + E SA  +TR+DWKETPEAHVFKAD+PGL          DGRVLQISGER+ E+E+KND WHRVERSSGK +RRF LPENAK+DQ++ASMENGVL               AIDIS
Sbjct:    7 FFGGRRSSVFDPFSLDVWDPFKDFP-----FPSSLSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIDIS 152          
The following BLAST results are available for this feature:
BLAST of CX046769 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HS181_ARATH2.756e-4764.0018.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP11_DAUCA3.047e-4659.3317.8 kDa class I heat shock protein OS=Daucus caro... [more]
HSP11_CHERU3.047e-4667.6718.3 kDa class I heat shock protein OS=Chenopodium... [more]
HSP12_MEDSA5.197e-4661.5918.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP16_SOYBN1.158e-4559.7418.5 kDa class I heat shock protein OS=Glycine max... [more]
HS17C_ARATH1.975e-4562.4217.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HSP11_PEA4.400e-4568.7018.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP11_HELAN4.400e-4567.6917.6 kDa class I heat shock protein OS=Helianthus ... [more]
HSP17_ARATH7.505e-4558.2817.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP11_SOYBN1.672e-4461.5917.3 kDa class I heat shock protein OS=Glycine max... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10B01_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10B01-D1-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046769 ID=CX046769; Name=CX046769; organism=Citrus sinensis; type=EST; length=872bp
AAAATTTATTATACATTAGTACACACACACACAGAAACAGAAGCAAACGC
AGCAAATTAAGCTACGTACATAGTGAAACACACACACGTACACACAGCGA
CATGGCTTTGAGTCTTTTTGATAGTGGCCGGAGGAGCAACGTGTTCGATC
CGTTTTCACTGGACATATGGGATCCCTTTGAAGGGTTCTCATCGTCAGTC
GCTAATATTCCGTCCTCAGCAAGGGAAACATCAGCCTTAGCCAACACAAG
AATTGACTGGAAAGAGACCCCAGAAGCTCATGTGTTTAAGGCTGATCTTC
CGGGGCTGAAGAAGGAAGAGGTGAAGGTGGAGGTTGAAGATGGAAGGGTT
CTGCAGATAAGTGGAGAGAGGAGCAGAGAGCAGGAGGAGAAGAACGACAA
GTGGCACCGTGTTGAGAGGAGCAGTGGAAAGTTCATGAGGAGGTTCGGGT
TGCCTGAGAATGCCAAGATGGATCAGATCAGAGCTAGCATGGAGAACGGT
GTGCTTACTGTCACTGTCCCTAAAGAGGATGTTAAGAAGCCTGAGGTTAA
GGCTATTGACATTTCTGCCTGAGGTTGAGCCCGAGGCCGAGAAACAAGTT
GTCATACAAAATGATATGTCATCTACATATACATCCATGCACATGGCTTT
AACTAAATCAAGTAGGGTTTTTTGGCCTTTTGATCAGTTTTCTCTTCTGT
CTGAATAATAATAGTAAATAATATTGTAGTGTAGTGTTGTCTACTTGTCT
TGTCTTGTTTTTGTGTTTCTGGTTGTACTTTTGTGATGTGATCTCATGTG
TATTATACATGAAGTTATAAAATGTTTGTTGTAAATTAAGCTTATAGAAA
TAATGTAAAAAAAAAAAAAAAA
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