CX046760

Overview
NameCX046760
Unique NameCX046760
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1578 contig Csv1_Contig1578:307..1175. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046760 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.120e-24
Identity = 59/134 (44.03%), Postives = 81/134 (60.45%), Query Frame = -2
Query:  458 AMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 859
            A+ EM G  C  RP+R+ +ATPK  S          + ++  P    +  Q      ++ N+T+FVG L   VS+E+L+  F  FGEI+ VKIP GKGCGFVQF NR+ AE+A+ +LQG  +G   +RLSWGRN
Sbjct:  244 ALAEMQGQICGDRPIRVGLATPK--SKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN 375          
BLAST of CX046760 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.282e-20
Identity = 55/137 (40.15%), Postives = 78/137 (56.93%), Query Frame = -2
Query:  458 RSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 868
            +  A+  M G  C  RP+RI VA+PK  +         AL +     SN    Q   S  +  N T+FVG L S++S++DL+  F  FG IL++KIP GKGCGFVQ++ +  AE A+  +QG  +G   +RL+WG N
Sbjct:  237 QQHALMHMQGYLCQGRPLRISVASPKSRASIAADS---ALGIVPTSTSNRQPNQDLCSM-DPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 369          
BLAST of CX046760 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 5.572e-16
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = -2
Query:  458 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 688
            + NN T+F+G L S V++++LR  F  FG I+ VKIPVGK CGFVQ+ +R  AE A+  +QG  I    VRLSWGR+
Sbjct:  309 DPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGRS 385          
BLAST of CX046760 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.793e-14
Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = -2
Query:  461 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGR 688
            +  N T+FVG L    ++  LR  F  FG IL+V+IP GK CGFV+F  R DAE ++Q LQG  +G   +RLSWGR
Sbjct:  356 DPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGR 431          
BLAST of CX046760 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.423e-11
Identity = 52/174 (29.89%), Postives = 77/174 (44.25%), Query Frame = -2
Query:  368 RAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGR-NPGNKQWRGDHSNHW--NGAHYGGQGYSGNGYA 862
            +A+ EM G     RP+  D++T K                   P  N  R +         + T+F+G L  +   + + E F++ GE++SV+IP        KG G+VQF+N +DA+ AL  LQG  I  + VRL +    P N   RG         G   G +G+ G G A
Sbjct:  224 KAIQEMQGKEIDGRPINCDMSTSK-------------------PAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRPNNDGGRGGSRGFGGRGGGRGGNRGFGGRGGA 378          
The following BLAST results are available for this feature:
BLAST of CX046760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
YG41_SCHPO1.120e-2444.03Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
CSX1_SCHPO1.282e-2040.15RNA-binding post-transcriptional regulator csx1 OS... [more]
NAM8_YEAST5.572e-1651.95Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 P... [more]
NGR1_YEAST1.793e-1450.00Negative growth regulatory protein NGR1 OS=Sacchar... [more]
NSR1_YEAST2.423e-1129.89Nuclear localization sequence-binding protein OS=S... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_10A08_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10A08-B15-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046760 ID=CX046760; Name=CX046760; organism=Citrus sinensis; type=EST; length=869bp
TTTTTTTTTTTTTTTTTGATGGGCATTCAAGAGTTCTGTTCTTGGCATTC
TCCTCTTGAGTTTAGTTCAGAAACACAAACATAACAATCCCTCTCAAACA
GACTCCCCAAGAATGAAAAATAATAATACAAGCCTCACACATCTCCAAGC
TATTAAGTATATTCCAGCTACAAAATTCTGCAAACTACAGATTTAGCTAC
ATGTTCAGCAGCAAAATCCATCCTACTTTAGTTCATAGATCTCATTGGGT
AATTTCAGCCAGTTCAGCAAGTTCAGATTACACGGTGTCGTACTGCCCTC
ATACTTCTTAAGAAGCACCGGGAACCGCTGTTGCAGCATACATGTTTGGA
TCTTGATTTGGCGGAAAAGCATATCCATTGCCACTATAGCCCTGACCTCC
ATAGTGTGCCCCATTCCAGTGGTTACTGTGATCTCCTCTCCACTGTTTGT
TCCCAGGATTGCGACCCCAAGAAAGACGGACTGTTTGCTTGCCTATAGCG
GTCCCTTGTAACTTCTGCAATGCAACCTCAGCATCCTTTCTGTTTGCAAA
TTGCACAAACCCACATCCTTTACCAACAGGTATTTTAACAGAAAGAATCT
CACCAAACTGAGAAAAAGGCTCTCTGAGATCCTCATCACTGACATCAGAA
TCAAGTGCCCCAACAAATATAGTCGCATTATTGGACTCGCCATCAGATTG
AGAACCTTGGACCCTAGCACCATTTGACCCAGGTCCACCAGCCAATACAA
GAGCTTGTGAAGAATACTGTTGTTGATATCCAGAAGCCTTTTTGGGGGTT
GCAACATCTATGCGCATCGGCCTACTTGAACAATACACACCATTCATTTC
GGTCATGGCCCTTGACCTC
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