CX046760
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX046760 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2) HSP 1 Score: 114.005 bits (284), Expect = 1.120e-24 Identity = 59/134 (44.03%), Postives = 81/134 (60.45%), Query Frame = -2 Query: 458 AMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 859 A+ EM G C RP+R+ +ATPK S + ++ P + Q ++ N+T+FVG L VS+E+L+ F FGEI+ VKIP GKGCGFVQF NR+ AE+A+ +LQG +G +RLSWGRN Sbjct: 244 ALAEMQGQICGDRPIRVGLATPK--SKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN 375
BLAST of CX046760 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.282e-20 Identity = 55/137 (40.15%), Postives = 78/137 (56.93%), Query Frame = -2 Query: 458 RSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 868 + A+ M G C RP+RI VA+PK + AL + SN Q S + N T+FVG L S++S++DL+ F FG IL++KIP GKGCGFVQ++ + AE A+ +QG +G +RL+WG N Sbjct: 237 QQHALMHMQGYLCQGRPLRISVASPKSRASIAADS---ALGIVPTSTSNRQPNQDLCSM-DPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 369
BLAST of CX046760 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 5.572e-16 Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = -2 Query: 458 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 688 + NN T+F+G L S V++++LR F FG I+ VKIPVGK CGFVQ+ +R AE A+ +QG I VRLSWGR+ Sbjct: 309 DPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGRS 385
BLAST of CX046760 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 1.793e-14 Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = -2 Query: 461 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGR 688 + N T+FVG L ++ LR F FG IL+V+IP GK CGFV+F R DAE ++Q LQG +G +RLSWGR Sbjct: 356 DPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGR 431
BLAST of CX046760 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.423e-11 Identity = 52/174 (29.89%), Postives = 77/174 (44.25%), Query Frame = -2 Query: 368 RAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGR-NPGNKQWRGDHSNHW--NGAHYGGQGYSGNGYA 862 +A+ EM G RP+ D++T K P N R + + T+F+G L + + + E F++ GE++SV+IP KG G+VQF+N +DA+ AL LQG I + VRL + P N RG G G +G+ G G A Sbjct: 224 KAIQEMQGKEIDGRPINCDMSTSK-------------------PAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRPNNDGGRGGSRGFGGRGGGRGGNRGFGGRGGA 378 The following BLAST results are available for this feature:
BLAST of CX046760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX046760 ID=CX046760; Name=CX046760; organism=Citrus sinensis; type=EST; length=869bpback to top |