CX046738

Overview
NameCX046738
Unique NameCX046738
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046738_ssr69 microsatellite CX046738_ssr69:69..80. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2997 contig Csv1_Contig2997:1..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046738 vs. ExPASy Swiss-Prot
Match: SSRA_ARATH (Translocon-associated protein subunit alpha OS=Arabidopsis thaliana GN=At2g21160 PE=2 SV=3)

HSP 1 Score: 239.58 bits (610), Expect = 1.309e-62
Identity = 123/200 (61.50%), Postives = 152/200 (76.00%), Query Frame = 3
Query:  147 QVARCQSDSETGVAETEGGDLGIVGEDAQDFG-------DGTFSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTLGIALLVLFGLWIHGQVKQL 725
            QVARCQSD+E   +  +     +VGE+  D         D   S  PGV+TVC+FPKNSA++V AGEETELLVG+KN+G++ V V+ I+ASVHLP+DH LLVQNLT    NNA++P S QATFPYIFAVS++LQPG FDLVG I+Y+V+  PYQS FYNGTIEVVESGG +S ESVFL+TLGI LL+L GLW + QV++L
Sbjct:   20 QVARCQSDAEDHSSLVDD----VVGENTDDAVEEDDHDLDMNLSSFPGVETVCVFPKNSAKLVPAGEETELLVGLKNEGKTRVGVMGIRASVHLPYDHKLLVQNLTMLRLNNASIPTSLQATFPYIFAVSQYLQPGAFDLVGYIIYDVEGKPYQSVFYNGTIEVVESGGLLSGESVFLLTLGIGLLLLLGLWAYSQVQRL 215          
BLAST of CX046738 vs. ExPASy Swiss-Prot
Match: SSRA_DICDI (Translocon-associated protein subunit alpha OS=Dictyostelium discoideum GN=ssr1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.365e-17
Identity = 51/154 (33.12%), Postives = 81/154 (52.60%), Query Frame = 3
Query:  255 SPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTLGIALLVLFGLWIHGQV 716
            +P   V    IFP N  +  AAG   E+LVG  N+ + ++N+  I AS++ P D S+ +QN T   F  A V     AT  Y F  S++L+P  F L+ S+ Y+     +  TF+N TI + E      ++S FL+ LG+  +   G  ++G++
Sbjct:   34 TPTSDVSFSYIFPDNQDKNFAAGSVVEVLVGFTNNADKALNITHIFASLNHPQDFSVFIQNYTRGDFGIA-VEKGHHATLAYRFVPSEYLEPREFGLLISLEYQDGAQNFTQTFFNSTINITEKETSFDMDSFFLILLGLGFVGGIGYIVYGKM 186          
BLAST of CX046738 vs. ExPASy Swiss-Prot
Match: SSRA_RAT (Translocon-associated protein subunit alpha OS=Rattus norvegicus GN=Ssr1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.794e-11
Identity = 54/180 (30.00%), Postives = 82/180 (45.56%), Query Frame = 3
Query:  168 DSETGVAETEGGDLGIVGEDAQDFGDGTFSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGL 698
            D E  V E E  DL    E+ +D        +P  DT  +F K       A    + LVG  N G     V ++ AS   P D+   +QN T     N  VP   QATF Y F  ++ +    F LV ++ Y +++ + +Q   +N T+ V+E    +  E++F+     G+ LLV+ GL
Sbjct:   51 DDEAEVEEDEPTDLAEEKEEEEDVSSEP-EASPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPL-NTIVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVVVGL 226          
BLAST of CX046738 vs. ExPASy Swiss-Prot
Match: SSRA_PONAB (Translocon-associated protein subunit alpha OS=Pongo abelii GN=SSR1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.343e-11
Identity = 54/180 (30.00%), Postives = 83/180 (46.11%), Query Frame = 3
Query:  168 DSETGVAETEGGDLGIVGEDAQDFGDGTFSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGL 698
            D E  V E E  DL  V +  ++   G    +P  DT  +F K       A    + LVG  N G     V ++ AS   P D+   +QN T     N  VP   QATF Y F  ++ +    F LV ++ Y +++ + +Q   +N T+ V+E    +  E++F+     G+ LLV+ GL
Sbjct:   51 DDEAEVEEDEPTDL--VEDKEEEDVSGEPEASPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPL-NTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGL 225          
BLAST of CX046738 vs. ExPASy Swiss-Prot
Match: SSRA_HUMAN (Translocon-associated protein subunit alpha OS=Homo sapiens GN=SSR1 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.343e-11
Identity = 54/180 (30.00%), Postives = 83/180 (46.11%), Query Frame = 3
Query:  168 DSETGVAETEGGDLGIVGEDAQDFGDGTFSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGL 698
            D E  V E E  DL  V +  ++   G    +P  DT  +F K       A    + LVG  N G     V ++ AS   P D+   +QN T     N  VP   QATF Y F  ++ +    F LV ++ Y +++ + +Q   +N T+ V+E    +  E++F+     G+ LLV+ GL
Sbjct:   51 DDEAEVEEDEPTDL--VEDKEEEDVSGEPEASPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPL-NTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGL 225          
BLAST of CX046738 vs. ExPASy Swiss-Prot
Match: SSRA_CANFA (Translocon-associated protein subunit alpha OS=Canis familiaris GN=SSR1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 54/180 (30.00%), Postives = 83/180 (46.11%), Query Frame = 3
Query:  168 DSETGVAETEGGDLGIVGEDAQDFGDGTFSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGL 698
            D E  V E E  DL    E+    G+   SP+   DT  +F K       A    + LVG  N G     V ++ AS   P D+   +QN T     N  VP   QATF Y F  ++ +    F LV ++ Y +++ + +Q   +N T+ ++E    +  E++F+     G+ LLV+ GL
Sbjct:   51 DDEAEVEEDEPTDLAEDKEEEDVSGEPEASPS--ADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPL-NTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTIIEREDGLDGETIFMYMFLAGLGLLVVVGL 225          
BLAST of CX046738 vs. ExPASy Swiss-Prot
Match: SSRA_BOVIN (Translocon-associated protein subunit alpha OS=Bos taurus GN=SSR1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 53/180 (29.44%), Postives = 82/180 (45.56%), Query Frame = 3
Query:  168 DSETGVAETEGGDLGIVGEDAQDFGDGTFSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGL 698
            D E  V E E  DL    +  +D   G    +P  DT  +F K       A    + LVG  N G     V ++ AS   P D+   +QN T     N  VP   QATF Y F  ++ +    F LV ++ Y +++ + +Q   +N T+ ++E    +  E++F+     G+ LLV+ GL
Sbjct:   51 DDEAEVEEDEPTDLA--EDKEEDDVSGEPEASPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPL-NTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTIIEREDGLDGETIFMYMFLAGLGLLVVVGL 225          
The following BLAST results are available for this feature:
BLAST of CX046738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SSRA_ARATH1.309e-6261.50Translocon-associated protein subunit alpha OS=Ara... [more]
SSRA_DICDI6.365e-1733.12Translocon-associated protein subunit alpha OS=Dic... [more]
SSRA_RAT1.794e-1130.00Translocon-associated protein subunit alpha OS=Rat... [more]
SSRA_PONAB2.343e-1130.00Translocon-associated protein subunit alpha OS=Pon... [more]
SSRA_HUMAN2.343e-1130.00Translocon-associated protein subunit alpha OS=Hom... [more]
SSRA_CANFA3.996e-1130.00Translocon-associated protein subunit alpha OS=Can... [more]
SSRA_BOVIN3.996e-1129.44Translocon-associated protein subunit alpha OS=Bos... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_9H08_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-9H08-P15-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046738 ID=CX046738|Name=CX046738|organism=Citrus sinensis|type=EST|length=725bp
GTAGCTTTGGCGGTGTATTCACTGATCACCTTCATTCAATTCCAAAGCGG
CGTCGTGTCAATTCAAACAACAAACAAACAACCATGGAGATGAAGACGTT
TAGGGTTTTCTTCTTCGCTCTCCTCCTTCTAGCCTCTCCTCTTCTTCAAG
TTGCTAGGTGTCAATCGGATTCGGAAACGGGAGTTGCAGAGACCGAAGGG
GGTGATCTTGGGATTGTTGGTGAGGATGCTCAAGATTTTGGTGATGGGAC
TTTTAGCCCTGCTCCAGGAGTGGATACTGTCTGTATCTTCCCTAAAAATA
GCGCCCGAGTGGTGGCTGCTGGAGAAGAAACTGAACTACTGGTTGGGATG
AAAAATGATGGGGAGTCAAGCGTGAATGTGATTGCAATTCAGGCCAGTGT
TCATCTCCCTTTTGATCACAGTCTTTTGGTTCAAAATCTCACTGGACAGG
CCTTTAACAATGCAACTGTGCCGGTATCAGCTCAGGCTACCTTTCCATAC
ATTTTTGCTGTCAGCAAGTTCTTGCAGCCTGGAACTTTTGATCTTGTGGG
CTCCATTGTTTATGAGGTAGACCAGCATCCTTACCAAAGCACCTTCTACA
ATGGTACCATTGAAGTTGTTGAATCTGGTGGGTTCATCAGCATTGAGTCC
GTTTTTCTTGTTACCCTTGGAATTGCGCTTCTCGTCCTTTTTGGGTTATG
GATTCATGGTCAAGTCAAACAATTG
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