CX046738
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX046738 vs. ExPASy Swiss-Prot
Match: SSRA_ARATH (Translocon-associated protein subunit alpha OS=Arabidopsis thaliana GN=At2g21160 PE=2 SV=3) HSP 1 Score: 239.58 bits (610), Expect = 1.309e-62 Identity = 123/200 (61.50%), Postives = 152/200 (76.00%), Query Frame = 3 Query: 147 QVARCQSDSETGVAETEGGDLGIVGEDAQDFG-------DGTFSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTLGIALLVLFGLWIHGQVKQL 725 QVARCQSD+E + + +VGE+ D D S PGV+TVC+FPKNSA++V AGEETELLVG+KN+G++ V V+ I+ASVHLP+DH LLVQNLT NNA++P S QATFPYIFAVS++LQPG FDLVG I+Y+V+ PYQS FYNGTIEVVESGG +S ESVFL+TLGI LL+L GLW + QV++L Sbjct: 20 QVARCQSDAEDHSSLVDD----VVGENTDDAVEEDDHDLDMNLSSFPGVETVCVFPKNSAKLVPAGEETELLVGLKNEGKTRVGVMGIRASVHLPYDHKLLVQNLTMLRLNNASIPTSLQATFPYIFAVSQYLQPGAFDLVGYIIYDVEGKPYQSVFYNGTIEVVESGGLLSGESVFLLTLGIGLLLLLGLWAYSQVQRL 215
BLAST of CX046738 vs. ExPASy Swiss-Prot
Match: SSRA_DICDI (Translocon-associated protein subunit alpha OS=Dictyostelium discoideum GN=ssr1 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.365e-17 Identity = 51/154 (33.12%), Postives = 81/154 (52.60%), Query Frame = 3 Query: 255 SPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTLGIALLVLFGLWIHGQV 716 +P V IFP N + AAG E+LVG N+ + ++N+ I AS++ P D S+ +QN T F A V AT Y F S++L+P F L+ S+ Y+ + TF+N TI + E ++S FL+ LG+ + G ++G++ Sbjct: 34 TPTSDVSFSYIFPDNQDKNFAAGSVVEVLVGFTNNADKALNITHIFASLNHPQDFSVFIQNYTRGDFGIA-VEKGHHATLAYRFVPSEYLEPREFGLLISLEYQDGAQNFTQTFFNSTINITEKETSFDMDSFFLILLGLGFVGGIGYIVYGKM 186
BLAST of CX046738 vs. ExPASy Swiss-Prot
Match: SSRA_RAT (Translocon-associated protein subunit alpha OS=Rattus norvegicus GN=Ssr1 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.794e-11 Identity = 54/180 (30.00%), Postives = 82/180 (45.56%), Query Frame = 3 Query: 168 DSETGVAETEGGDLGIVGEDAQDFGDGTFSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGL 698 D E V E E DL E+ +D +P DT +F K A + LVG N G V ++ AS P D+ +QN T N VP QATF Y F ++ + F LV ++ Y +++ + +Q +N T+ V+E + E++F+ G+ LLV+ GL Sbjct: 51 DDEAEVEEDEPTDLAEEKEEEEDVSSEP-EASPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPL-NTIVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVVVGL 226
BLAST of CX046738 vs. ExPASy Swiss-Prot
Match: SSRA_PONAB (Translocon-associated protein subunit alpha OS=Pongo abelii GN=SSR1 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.343e-11 Identity = 54/180 (30.00%), Postives = 83/180 (46.11%), Query Frame = 3 Query: 168 DSETGVAETEGGDLGIVGEDAQDFGDGTFSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGL 698 D E V E E DL V + ++ G +P DT +F K A + LVG N G V ++ AS P D+ +QN T N VP QATF Y F ++ + F LV ++ Y +++ + +Q +N T+ V+E + E++F+ G+ LLV+ GL Sbjct: 51 DDEAEVEEDEPTDL--VEDKEEEDVSGEPEASPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPL-NTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGL 225
BLAST of CX046738 vs. ExPASy Swiss-Prot
Match: SSRA_HUMAN (Translocon-associated protein subunit alpha OS=Homo sapiens GN=SSR1 PE=1 SV=3) HSP 1 Score: 69.3218 bits (168), Expect = 2.343e-11 Identity = 54/180 (30.00%), Postives = 83/180 (46.11%), Query Frame = 3 Query: 168 DSETGVAETEGGDLGIVGEDAQDFGDGTFSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGL 698 D E V E E DL V + ++ G +P DT +F K A + LVG N G V ++ AS P D+ +QN T N VP QATF Y F ++ + F LV ++ Y +++ + +Q +N T+ V+E + E++F+ G+ LLV+ GL Sbjct: 51 DDEAEVEEDEPTDL--VEDKEEEDVSGEPEASPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPL-NTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGL 225
BLAST of CX046738 vs. ExPASy Swiss-Prot
Match: SSRA_CANFA (Translocon-associated protein subunit alpha OS=Canis familiaris GN=SSR1 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11 Identity = 54/180 (30.00%), Postives = 83/180 (46.11%), Query Frame = 3 Query: 168 DSETGVAETEGGDLGIVGEDAQDFGDGTFSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGL 698 D E V E E DL E+ G+ SP+ DT +F K A + LVG N G V ++ AS P D+ +QN T N VP QATF Y F ++ + F LV ++ Y +++ + +Q +N T+ ++E + E++F+ G+ LLV+ GL Sbjct: 51 DDEAEVEEDEPTDLAEDKEEEDVSGEPEASPS--ADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPL-NTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTIIEREDGLDGETIFMYMFLAGLGLLVVVGL 225
BLAST of CX046738 vs. ExPASy Swiss-Prot
Match: SSRA_BOVIN (Translocon-associated protein subunit alpha OS=Bos taurus GN=SSR1 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11 Identity = 53/180 (29.44%), Postives = 82/180 (45.56%), Query Frame = 3 Query: 168 DSETGVAETEGGDLGIVGEDAQDFGDGTFSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGL 698 D E V E E DL + +D G +P DT +F K A + LVG N G V ++ AS P D+ +QN T N VP QATF Y F ++ + F LV ++ Y +++ + +Q +N T+ ++E + E++F+ G+ LLV+ GL Sbjct: 51 DDEAEVEEDEPTDLA--EDKEEDDVSGEPEASPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPL-NTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTIIEREDGLDGETIFMYMFLAGLGLLVVVGL 225 The following BLAST results are available for this feature:
BLAST of CX046738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX046738 ID=CX046738; Name=CX046738; organism=Citrus sinensis; type=EST; length=725bpback to top |