CX046737

Overview
NameCX046737
Unique NameCX046737
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046737_ssr309 microsatellite CX046737_ssr309:309..320. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2997 contig Csv1_Contig2997:344..1146. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX046737 vs. ExPASy Swiss-Prot
Match: SSRA_ARATH (Translocon-associated protein subunit alpha OS=Arabidopsis thaliana GN=At2g21160 PE=2 SV=3)

HSP 1 Score: 215.312 bits (547), Expect = 3.150e-55
Identity = 103/151 (68.21%), Postives = 127/151 (84.11%), Query Frame = -1 
Query:  351 DGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTLGIALLVLFGLWIHGQVKQLSKKTKKAPKVEVGTGTTDASMDEWLQGT 803
            +G++ V V+ I+ASVHLP+DH LLVQNLT    NNA++P S QATFPYIFAVS++LQPG FDLVG I+Y+V+  PYQS FYNGTIEVVESGG +S ESVFL+TLGI LL+L GLW + QV++L+KKTKK  KVEVGT +T+AS+DEWL+GT
Sbjct:   93 EGKTRVGVMGIRASVHLPYDHKLLVQNLTMLRLNNASIPTSLQATFPYIFAVSQYLQPGAFDLVGYIIYDVEGKPYQSVFYNGTIEVVESGGLLSGESVFLLTLGIGLLLLLGLWAYSQVQRLTKKTKKVSKVEVGTRSTEASLDEWLEGT 243
[Close]
BLAST of CX046737 vs. ExPASy Swiss-Prot
Match: SSRA_DICDI (Translocon-associated protein subunit alpha OS=Dictyostelium discoideum GN=ssr1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.339e-13
Identity = 50/158 (31.65%), Postives = 81/158 (51.27%), Query Frame = -1 
Query:  348 DGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTLGIALLVLFGLWIHG------QVKQLSKKTKKAPKVEVGTGTTDASMDEWLQGTA 803
            + + ++N+  I AS++ P D S+ +QN T   F  A V     AT  Y F  S++L+P  F L+ S+ Y+     +  TF+N TI + E      ++S FL+ LG+  +   G  ++G      +V+ +SK  K A +VE     T+    EWL GT+
Sbjct:   68 NADKALNITHIFASLNHPQDFSVFIQNYTRGDFGIA-VEKGHHATLAYRFVPSEYLEPREFGLLISLEYQDGAQNFTQTFFNSTINITEKETSFDMDSFFLILLGLGFVGGIGYIVYGKMPKQKKVRTVSKVNKNAVRVE-----TEDETAEWLSGTS 219
The following BLAST results are available for this feature:
BLAST of CX046737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SSRA_ARATH3.150e-5568.21Translocon-associated protein subunit alpha OS=Ara... [more]
SSRA_DICDI1.339e-1331.65Translocon-associated protein subunit alpha OS=Dic... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_9H08_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-9H08-P15-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046737 ID=CX046737; Name=CX046737; organism=Citrus sinensis; type=EST; length=803bp
TTTTTTTTTTTTTTTAATCTAAAAAGGATTCTTCAGATTCAAGAAAAAAT
TCTGTTCTTCCTACTCAAAATCAGAGTTAGTTTCCCTTCAAAATGGCTCA
ACCTTTTTAGAATCTCCGAGAAAATATAAATATCTATGATTTCTTTCCAA
ATGCTACAACAGCAAGGCAGGTCTTTTCTGGCCTACTTCCCAAAACTACT
TCCACTCGTATGCTCTCTAAAATTTCCAAATTCCTAGCGTGAGTTACAAG
AGTTCGCACTTCACCAGAATGCCTGATGCAGCTGTACTGGGCAATAGTTG
CTCATCTACTTCTTCTTCTTTGATTTGCTGGACAATGACTGAGTATATGC
AGTTCCCTGAAGCCATTCGTCCATTGAGGCATCTGTAGTTCCTGTACCAA
CTTCCACCTTTGGAGCCTTCTTAGTTTTCTTGGACAATTGTTTGACTTGA
CCATGAATCCATAACCCAAAAAGGACGAGAAGCGCAATTCCAAGGGTAAC
AAGAAAAACGGACTCAATGCTGATGAACCCACCAGATTCAACAACTTCAA
TGGTACCATTGTAGAAGGTGCTTTGGTAAGGATGCTGGTCTACCTCATAA
ACAATGGAGCCCACAAGATCAAAAGTTCCAGGCTGCAAGAACTTGCTGAC
AGCAAAAATGTATGGAAAGGTAGCCTGAGCTGATACCGGCACAGTTGCAT
TGTTAAAGGCCTGTCCAGTGAGATTTTGAACCAAAAGACTGTGATCAAAA
GGGAGATGAACACTGGCCTGAATTGCAATCACATTCACGCTTGACTCCCC
ATC
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