CX046730

Overview
NameCX046730
Unique NameCX046730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046730_ssr262 microsatellite CX046730_ssr262:262..273. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3800 contig Csv1_Contig3800:707..1463. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046730 vs. ExPASy Swiss-Prot
Match: SCL3_ARATH (Scarecrow-like protein 3 OS=Arabidopsis thaliana GN=SCL3 PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.958e-68
Identity = 122/158 (77.22%), Postives = 138/158 (87.34%), Query Frame = -2
Query:  283 ASAKMDSFLNSLWGLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRLLQSYNCDGYRIAEDNRCVLICWHDRPLFSVSAWSCRK 756
            +S + DSFLN++WGLSPKVMVVTEQDS+HNG TLMERLLE+LY+YAALFDCLE+ V RTS +R+KVEKMLFGEEIKNII+CEGFER+ERHEKLEKW QR DLA FGNVPLSY  MLQARRLLQ    DGYRI E++ C +ICW DRPL+SVSAW CRK
Sbjct:  325 SSGRTDSFLNAIWGLSPKVMVVTEQDSDHNGSTLMERLLESLYTYAALFDCLETKVPRTSQDRIKVEKMLFGEEIKNIISCEGFERRERHEKLEKWSQRIDLAGFGNVPLSYYAMLQARRLLQGCGFDGYRIKEESGCAVICWQDRPLYSVSAWRCRK 482          
BLAST of CX046730 vs. ExPASy Swiss-Prot
Match: RGL2_ARATH (DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.257e-26
Identity = 62/154 (40.26%), Postives = 91/154 (59.09%), Query Frame = -2
Query:  295 SAKMDSFLNSLWGLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRLLQSY-NCDGYRIAEDNRCVLICWHDRPLFSVSAW 753
            S  ++  LN++  + P ++ V EQ++NHNG+  ++R  EAL+ Y++LFD LE S S  S +R+  E  L G +I N++A EG +R ERHE   +W  R   A F  + L      QA  LL  Y   DGYR+ E++ C++I W  RPL + SAW
Sbjct:  392 SGSIEKLLNTVKAIKPSIVTVVEQEANHNGIVFLDRFNEALHYYSSLFDSLEDSYSLPSQDRVMSEVYL-GRQILNVVAAEGSDRVERHETAAQWRIRMKSAGFDPIHLGSSAFKQASMLLSLYATGDGYRVEENDGCLMIGWQTRPLITTSAW 544          
BLAST of CX046730 vs. ExPASy Swiss-Prot
Match: RGL1_ARATH (DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.642e-26
Identity = 59/151 (39.07%), Postives = 89/151 (58.94%), Query Frame = -2
Query:  295 MDSFLNSLWGLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRLLQSY-NCDGYRIAEDNRCVLICWHDRPLFSVSAW 744
            +D FL+++  + P +M V EQ++NHNG   ++R  E+L+ Y++LFD LE   S+  +    + ++  G +I N++ACEG +R ERHE L +W  RF L  F  V +      QA  LL  Y   DGY + E+  C+L+ W  RPL + SAW
Sbjct:  359 IDKFLSTIKSIRPDIMTVVEQEANHNGTVFLDRFTESLHYYSSLFDSLEGPPSQDRV----MSELFLGRQILNLVACEGEDRVERHETLNQWRNRFGLGGFKPVSIGSNAYKQASMLLALYAGADGYNVEENEGCLLLGWQTRPLIATSAW 505          
BLAST of CX046730 vs. ExPASy Swiss-Prot
Match: GAI_GOSHI (DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.371e-25
Identity = 56/147 (38.10%), Postives = 89/147 (60.54%), Query Frame = -2
Query:  307 MDSFLNSLWGLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRLLQSY-NCDGYRIAEDNRCVLICWHDRPLFS 744
            ++  ++S+  + PK++ V EQ++NHNG   ++R  EAL+ Y+ LFD LE S    + + L + ++  G +I N++ACEG +R ERHE L +W  R + A    V L      QA  LL  + + DGYR+ E+N C+++ WH RPL +
Sbjct:  382 IEKVVSSIKAMKPKIVTVVEQEANHNGPVFLDRFTEALHYYSTLFDSLEGSGVAPASQDLAMSELYLGRQICNVVACEGMDRVERHEPLTQWRTRMETAGVSPVHLGSNAYKQASMLLALFASGDGYRVEENNGCLMLGWHTRPLIA 528          
BLAST of CX046730 vs. ExPASy Swiss-Prot
Match: GAI1_VITVI (DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.045e-25
Identity = 58/152 (38.16%), Postives = 91/152 (59.87%), Query Frame = -2
Query:  295 MDSFLNSLWGLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLES-SVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRLLQSY-NCDGYRIAEDNRCVLICWHDRPLFSVSAW 744
            ++  L+++  + P ++ + EQ++NHNG   ++R  E+L+ Y+ LFD LE   VS  + +   + ++  G++I N++ACEG ER ERHE L +W  R   A F  V L      QA  LL  +   DGYR+ E+N C+++ WH RPL + SAW
Sbjct:  423 IERVLSAVKDMKPDIVTIVEQEANHNGPVFLDRFTESLHYYSTLFDSLEGCGVSPVNTQDKLMSEVYLGQQICNVVACEGPERVERHETLAQWRARLGSAGFDPVNLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAW 574          
BLAST of CX046730 vs. ExPASy Swiss-Prot
Match: RGA1_BRACM (DELLA protein RGA1 OS=Brassica campestris GN=RGA1 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.900e-25
Identity = 59/141 (41.84%), Postives = 86/141 (60.99%), Query Frame = -2
Query:  295 LSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRLLQSYN-CDGYRIAEDNRCVLICWHDRPLFSVSAW 714
            + P +  V EQ+SNHNG   ++R  E+L+ Y+ LFD LE + S  S +++  E  L G++I N++ACEG +R ERHE L +W  RF  + F    L      QA  LL  +N  +GYR+ E+N C+++ WH RPL + SAW
Sbjct:  430 IKPVIFTVVEQESNHNGPVFLDRFTESLHYYSTLFDSLEGAPS--SQDKVMSEVYL-GKQICNLVACEGPDRVERHETLSQWSNRFGSSGFAPAHLGSNAFKQASTLLALFNGGEGYRVEENNGCLMLSWHTRPLITTSAW 567          
BLAST of CX046730 vs. ExPASy Swiss-Prot
Match: GAI_SOLLC (DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.177e-24
Identity = 60/164 (36.59%), Postives = 95/164 (57.93%), Query Frame = -2
Query:  295 MDSFLNSLWGLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSM-------------ERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRLLQSY-NCDGYRIAEDNRCVLICWHDRPLFSVSAW 744
            ++  LNS+  ++PK++ + EQ++NHN    ++R  EAL+ Y+ +FD LESS S +S              + L + ++  G +I N++ACEG +R ERHE L +W  R + + F  V L      QA  LL  +   DGYR+ E++ C+++ WH RPL + SAW
Sbjct:  410 IEKVLNSIKQINPKIVTLVEQEANHNAGVFIDRFNEALHYYSTMFDSLESSGSSSSASPTGILPQPPVNNQDLVMSEVYLGRQICNVVACEGSDRVERHETLNQWRVRMNSSGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENDGCLMLGWHTRPLIATSAW 573          
BLAST of CX046730 vs. ExPASy Swiss-Prot
Match: RGA2_BRACM (DELLA protein RGA2 OS=Brassica campestris GN=RGA2 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.629e-24
Identity = 58/141 (41.13%), Postives = 85/141 (60.28%), Query Frame = -2
Query:  295 LSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRLLQSYN-CDGYRIAEDNRCVLICWHDRPLFSVSAW 714
            + P +  V EQ+S+HNG   ++R  E+L+ Y+ LFD LE   S  S +++  E  L G++I N++ACEG +R ERHE L +W  RF  + F    L      QA  LL  +N  +GYR+ E+N C+++ WH RPL + SAW
Sbjct:  436 IKPVIFTVVEQESSHNGPVFLDRFTESLHYYSTLFDSLEGVPS--SQDKVMSEVYL-GKQICNLVACEGPDRVERHETLSQWANRFGSSGFAPAHLGSNAFKQASMLLALFNGGEGYRVEENNGCLMLGWHTRPLITTSAW 573          
BLAST of CX046730 vs. ExPASy Swiss-Prot
Match: SCL18_ARATH (Scarecrow-like protein 18 OS=Arabidopsis thaliana GN=SCL18 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.899e-23
Identity = 54/148 (36.49%), Postives = 91/148 (61.49%), Query Frame = -2
Query:  295 FLNSLWGLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRLLQ-SYNCDGYRIAEDNRCVLICWHDRPLFSVSAW 735
            FL+++  L+ +++ + E+++NH   + + R  EA+  Y A+FD LE+++   S ERL +E+  FG+EI +++A E  ERK+RH + E W +      F NVP+    + QA+ LL+  Y  +GY +   N  + + W +RPLFSVS+W
Sbjct:  297 FLSAIKSLNSRIVTMAEREANHGDHSFLNRFSEAVDHYMAIFDSLEATLPPNSRERLTLEQRWFGKEILDVVAAEETERKQRHRRFEIWEEMMKRFGFVNVPIGSFALSQAKLLLRLHYPSEGYNLQFLNNSLFLGWQNRPLFSVSSW 444          
BLAST of CX046730 vs. ExPASy Swiss-Prot
Match: RGA_ARATH (DELLA protein RGA OS=Arabidopsis thaliana GN=RGA PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.945e-23
Identity = 57/141 (40.43%), Postives = 82/141 (58.16%), Query Frame = -2
Query:  295 LSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRLLQSYNC-DGYRIAEDNRCVLICWHDRPLFSVSAW 714
            + P +  V EQ+SNHNG   ++R  E+L+ Y+ LFD LE   +  S +++  E  L G++I N++ACEG +R ERHE L +W  RF  +      L      QA  LL  +N   GYR+ E N C+++ WH RPL + SAW
Sbjct:  443 IKPVIFTVVEQESNHNGPVFLDRFTESLHYYSTLFDSLEGVPN--SQDKVMSEVYL-GKQICNLVACEGPDRVERHETLSQWGNRFGSSGLAPAHLGSNAFKQASMLLSVFNSGQGYRVEESNGCLMLGWHTRPLITTSAW 580          
The following BLAST results are available for this feature:
BLAST of CX046730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
SCL3_ARATH2.958e-6877.22Scarecrow-like protein 3 OS=Arabidopsis thaliana G... [more]
RGL2_ARATH1.257e-2640.26DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2... [more]
RGL1_ARATH1.642e-2639.07DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1... [more]
GAI_GOSHI2.371e-2538.10DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=... [more]
GAI1_VITVI4.045e-2538.16DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 ... [more]
RGA1_BRACM6.900e-2541.84DELLA protein RGA1 OS=Brassica campestris GN=RGA1 ... [more]
GAI_SOLLC1.177e-2436.59DELLA protein GAI OS=Solanum lycopersicum GN=GAI P... [more]
RGA2_BRACM7.629e-2441.13DELLA protein RGA2 OS=Brassica campestris GN=RGA2 ... [more]
SCL18_ARATH2.899e-2336.49Scarecrow-like protein 18 OS=Arabidopsis thaliana ... [more]
RGA_ARATH4.945e-2340.43DELLA protein RGA OS=Arabidopsis thaliana GN=RGA P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_9H04_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-9H04-P7-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046730 ID=CX046730; Name=CX046730; organism=Citrus sinensis; type=EST; length=757bp
TTTTTTTTTTTTTTAATCCACAAAGAAGCACAATACATCATTTCAGAAAC
AATGATACAAATTAATAAAATTTAGTATACAACATAATCAAAACAAAAGC
TTATAGTTATCTATACATGCCAAATTAAGATCCAATCTAATTTCATTCGA
TGTAAAATGATACGAATGAAACAAACGACTAGTAGGTAGGTTCATGACTA
GGACTTTTATATCATTACAACAGTATGCATTGCAGATAAACAGAATCATT
TCAATGTCACCATCAATCAATCACCAGTCTTACTTCCTACAGCTCCATGC
TGATACCGAAAATAGAGGTCGATCGTGCCAGCAAATTAGCACACACCTGT
TGTCTTCTGCAATCCTATACCCATCACAGTTGTAGCTCTGCAACAATCTC
CTCGCCTGCAACATACCACAGTAGCTCAAAGGCACATTTCCAAAGCAAGC
CAAATCAAAACGTTGAATCCACTTCTCGAGTTTCTCATGTCTTTCCTTCC
TTTCAAATCCTTCACAAGCTATAATGTTTTTAATTTCCTCCCCAAACAGC
ATTTTCTCCACCTTCAATCTCTCCATTGATGTTCTTGAAACACTAGATTC
TAAACAATCAAACAATGCTGCATACGAGTAAAGAGCCTCCAATAACCTCT
CCATGAGAGTCAAGCCATTGTGATTAGAATCCTGTTCTGTCACCACCATA
ACTTTTGGTGACAAGCCCCACAGAGAATTAAGAAAGCTGTCCATCTTTGC
TGAAGCA
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