EY662382

Overview
NameEY662382
Unique NameEY662382
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8219 contig Csv1_Contig8219:22..576. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY662382 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.131e-28
Identity = 64/147 (43.54%), Postives = 90/147 (61.22%), Query Frame = 2 
Query:  119 MLGVFSSAIVSPPEELVA--AGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLF 553
            ML VF  +I  PP EL    AG +    KT    + + F      +    + +   +A++H NE+PL+ RS  V D++FC+F GALDN   LR+ YGL++ A E ++++EAYK LRDRAPYPP+ V+  L G FAFI++D   STLF
Sbjct:    1 MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREE-IAESFKTWKQDSTFYHLFNGNFMAFSHGNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLF 146
The following BLAST results are available for this feature:
BLAST of EY662382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC2.131e-2843.54Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-043-E07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY662382 ID=EY662382; Name=EY662382; organism=Citrus sinensis; type=EST; length=555bp
CCACGCGTCCGACTTTCCAGTTAAAGCCAAAGAGTTCCGAACGGATCAAA
GTTTTCTTGTAGGAGAGAGAAATTTCTAGGGCGAGAAAGCGAGAGAAAAG
GAAATTTGGTAGCTTAAAATGTTGGGAGTGTTCAGCAGCGCGATCGTTTC
ACCTCCAGAGGAGCTGGTGGCGGCCGGAAGCCGGACTCCGTCGCCGAAGA
CCACATCGACGGCACTGGTCGACCGTTTCCTCCAGACCAACTCGTCTGCT
GTGTCCGTACAGGTCGGGGACAACGTCACCCTCGCGTACACTCATCAGAA
CGAGTCTCCTTTACGGCAAAGATCATTTGCTGTGAAAGATGAGATCTTTT
GCTTGTTTGAGGGAGCACTTGATAACTTGGGAAGCCTGAGGCAGCAATAT
GGACTAGCTAAGTCGGCAAATGAAGTGATCTTGGTGATTGAGGCATACAA
GGCTCTGCGTGATCGGGCCCCTTACCCACCGAACCATGTCGTTGGCCACC
TTAGTGGGTACTTTGCCTTCATTGTCTACGACAAGTCCACCTCCACCTTG
TTTGT
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