FC921925

Overview
NameFC921925
Unique NameFC921925
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length467
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921925 vs. ExPASy Swiss-Prot
Match: RETO_PAPSO (Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.953e-15
Identity = 49/149 (32.89%), Postives = 73/149 (48.99%), Query Frame = 3
Query:    3 ITDRVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLPPLMQQSFPELGLTKEDCREMSFIESIVYLDGFKIRESINADVLINERFVKRFFIGKADFVTVPIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAG 449
            + D + ED  +S       +    +F  L LG  D    ++ + FPELGL  ++ +EMS+ ES+ +L G      +N   L   +F +R F  K DF  V +P+     A ++  E+     G +    +GGKMSEIS    PFPHR G
Sbjct:  273 VADELDEDFTVSVLGGVNGNDAWLMFLGLHLGRKDAAKTIIDEKFPELGLVDKEFQEMSWGESMAFLSGLDTISELNNRFL---KFDERAFKTKVDFTKVSVPLNVFRHALEMLSEQPG---GFIALNGFGGKMSEISTDFTPFPHRKG 415          
BLAST of FC921925 vs. ExPASy Swiss-Prot
Match: RETOL_ARATH (Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 5.163e-15
Identity = 46/140 (32.86%), Postives = 73/140 (52.14%), Query Frame = 3
Query:   27 LFISPFLYRENSTMVCLFTSLFLGGVDRLPPLMQQSFPELGLTKEDCREMSFIESIVYLDGFKIRESINADVLINERF-VKRFFIGKADFVTVPIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHR 443
            + I P   ++  T+     +LFLG  D +  L+ + FPELGL KE+C EM++ +S ++ D       ++  V ++       F   K+D+V   IP + +E  +    E        LVF PYGGKM+E++ +  PFPHR
Sbjct:  296 MLIQPVTRKKVKTVRASVVALFLGRADEVVALLSKEFPELGLKKENCSEMTWFQSALWWDNRLNATQVDPKVFLDRNLDTSSFGKRKSDYVATAIPKKGIESLFKKMIELGKIG---LVFNPYGGKMAEVAVNAKPFPHR 432          
BLAST of FC921925 vs. ExPASy Swiss-Prot
Match: RETO_ESCCA (Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.652e-11
Identity = 41/105 (39.05%), Postives = 56/105 (53.33%), Query Frame = 3
Query:  135 FPELGLTKEDCREMSFIESIVYLDGFKIRESINADVLINERFVKRFFIGKADFVTVPIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAG 449
            FPELGL +ED  EMS+ ES  YL G +    +N   L   +F +R F  K D    P+P +A  G  +   +E     G +    +GG+MS+IS    PFPHR+G
Sbjct:  313 FPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFL---KFDERAFKTKVDLTKEPLPSKAFYGLLERLSKE---PNGFIALNGFGGQMSKISSDFTPFPHRSG 411          
The following BLAST results are available for this feature:
BLAST of FC921925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RETO_PAPSO3.953e-1532.89Reticuline oxidase OS=Papaver somniferum GN=BBE1 P... [more]
RETOL_ARATH5.163e-1532.86Reticuline oxidase-like protein OS=Arabidopsis tha... [more]
RETO_ESCCA2.652e-1139.05Reticuline oxidase OS=Eschscholzia californica GN=... [more]
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Properties
Property NameValue
Genbank descriptionC06054A05T7 RindPdigS Citrus sinensis cDNA clone C06054A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921925 ID=FC921925; Name=FC921925; organism=Citrus sinensis; type=EST; length=467bp
ACATTACAGACAGGGTCCATGAAGATTTGTTCATCTCACCCTTCTTATAC
AGAGAGAATTCCACTATGGTCTGTTTATTCACATCGTTGTTTCTAGGTGG
GGTTGATAGGCTACCTCCATTGATGCAGCAGAGCTTCCCTGAGCTCGGAT
TAACTAAAGAAGACTGCAGAGAAATGAGCTTCATTGAATCCATCGTTTAC
CTTGACGGATTCAAGATTAGAGAGTCAATTAATGCAGATGTATTGATTAA
TGAGAGATTTGTCAAAAGGTTTTTCATAGGAAAAGCAGACTTTGTAACAG
TGCCGATTCCTGTGGAAGCTCTTGAAGGGGCATATGATTTATTTTATGAG
GAGGATCCACGAACCTACGGCCTTCTCGTGTTTTTTCCTTACGGTGGAAA
AATGAGTGAGATTTCAGAGTCCGAAATTCCATTCCCACATAGAGCTGGCA
ACATATACACACTTTTG
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