FC921921

Overview
NameFC921921
Unique NameFC921921
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length245
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13550 contig Csv1_Contig13550:5..249. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC921921 vs. ExPASy Swiss-Prot
Match: PDR1_TOBAC (Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.953e-12
Identity = 38/77 (49.35%), Postives = 41/77 (53.25%), Query Frame = -2 
Query:   14 YWANXKXWTLYGLVASQFGDMDDKKMDTGETVKQFLKDYFDFKHDXXXXXXXXXXXXXXXXXXXXXXGIKMXNFQRR 244
            YWAN   WTLYGLVASQFGD+  K  D  ETV+QFL+ YF FKHD                       IK  NFQRR
Sbjct: 1359 YWANPVAWTLYGLVASQFGDIQTKLSD-NETVEQFLRRYFGFKHDFLGVVAAVLTAYVFMFAFTFAFAIKAFNFQRR 1434
[Close]
BLAST of FC921921 vs. ExPASy Swiss-Prot
Match: PDR1_NICPL (Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.455e-11
Identity = 35/77 (45.45%), Postives = 39/77 (50.65%), Query Frame = -2 
Query:   14 YWANXKXWTLYGLVASQFGDMDDKKMDTGETVKQFLKDYFDFKHDXXXXXXXXXXXXXXXXXXXXXXGIKMXNFQRR 244
            YW     WTLYGLVASQFGD+ D   D  +TV+QFL+  F FKHD                      GIK  NFQRR
Sbjct: 1360 YWGCPIAWTLYGLVASQFGDLQDPLTDQNQTVEQFLRSNFGFKHDFLGVVAAVIVAFAVVFAFTFALGIKAFNFQRR 1436
The following BLAST results are available for this feature:
BLAST of FC921921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PDR1_TOBAC3.953e-1249.35Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR1_NICPL7.455e-1145.45Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
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Properties
Property NameValue
Genbank descriptionC06054A01T7 RindPdigS Citrus sinensis cDNA clone C06054A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921921 ID=FC921921; Name=FC921921; organism=Citrus sinensis; type=EST; length=245bp
ATCAGAATTACTATCGCCTCTGGAAGTTNAACATCTTAATTCCTAGGGCG
AAGAGAAATCCAAATAATGCTGCAAAGACAACGAGAACGGCTGCAACTAC
TCCCAGAAAATCATGTTTGAAATCAAAATAGTCCTTAAGAAACTGTTTCA
CCGTTTCACCAGTATCCATTTTCTTGTCGTCCATATCTCCGAACTGCGAA
GCAACCAGTCCATACAAGGTCCAANTTTTTNGGTTGGCCCAATAG
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