FC921919

Overview
NameFC921919
Unique NameFC921919
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length294
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9549 contig Csv1_Contig9549:484..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC921919 vs. ExPASy Swiss-Prot
Match: CTNS_ARATH (Cystinosin homolog OS=Arabidopsis thaliana GN=At5g40670 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.547e-20
Identity = 47/80 (58.75%), Postives = 59/80 (73.75%), Query Frame = -1 
Query:   55 GRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSXXXXXXXXXXXXXLPNHSWLWLINLFNTIQV 294
            G  +MIPVAANDVAFS+HAV++T +TLFQI IYERG QKVS++++ IV              LP HSWLWLI++FN+IQV
Sbjct:   81 GDKEMIPVAANDVAFSIHAVVMTAVTLFQIFIYERGPQKVSRLAIGIVVVVWGFAAICFFIALPTHSWLWLISIFNSIQV 160

HSP 2 Score: 22.3274 bits (46), Expect = 3.547e-20
Identity = 8/14 (57.14%), Postives = 11/14 (78.57%), Query Frame = -3 
Query:   14 YLKLIKYIPQAIMN 55
            ++  +KYIPQA MN
Sbjct:  161 FMTCVKYIPQAKMN 174
The following BLAST results are available for this feature:
BLAST of FC921919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CTNS_ARATH3.547e-2058.75Cystinosin homolog OS=Arabidopsis thaliana GN=At5g... [more]
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Properties
Property NameValue
Genbank descriptionC06053H10T7 RindPdigS Citrus sinensis cDNA clone C06053H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921919 ID=FC921919; Name=FC921919; organism=Citrus sinensis; type=EST; length=294bp
CTCTTCCTTTTAAGTTCATGATGGCCTGTGGAATATACTTGATGAGCTTT
AAATAACTTGAATAGTGTTAAAGAGGTTGATGAGCCAAAGCCAAGAATGG
TTTGGCAATGCTACGAAGAACCAAACTGCGGCAGCCAACCAAACAACAGA
GACAATTGCCATAGAAATCTTAGATACCTTCTGAACACCACGTTCATAGA
TTGCAATTTGGAACAGGGTAATTATTGTCAAGAGAACAGCATGCATTGAA
AACGCAACATCATTTGCTGCTACGGGAATCATCTGATCGCGGCC
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